Tver113427.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tipula vernalis
Gene Symbol
-
Assembly
GCA_958295665.1
Location
OY282559.1:345519444-345529500[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 37 0.0039 2.2 12.2 3.2 1 23 130 152 130 152 0.98
2 37 4.8 2.7e+03 2.5 4.2 2 23 155 173 155 173 0.88
3 37 0.0013 0.75 13.7 0.5 1 23 179 201 179 201 0.98
4 37 0.00057 0.32 14.8 3.2 1 23 207 229 207 229 0.97
5 37 0.082 46 8.0 0.1 2 23 238 259 237 259 0.93
6 37 3.3e-07 0.00018 25.0 0.4 3 23 267 287 265 287 0.97
7 37 0.00011 0.062 17.1 0.4 1 23 293 315 293 315 0.99
8 37 0.14 79 7.3 6.3 1 23 321 343 321 343 0.99
9 37 1.7 9.3e+02 3.9 1.2 1 8 349 356 349 358 0.93
10 37 0.0015 0.84 13.5 1.0 2 23 499 520 498 520 0.96
11 37 5.4 3e+03 2.3 4.1 2 23 523 541 522 541 0.83
12 37 0.00038 0.21 15.4 0.3 1 23 547 569 547 569 0.95
13 37 8.4e-05 0.047 17.5 2.1 1 20 575 594 575 597 0.92
14 37 0.0075 4.2 11.3 0.5 2 23 606 627 605 627 0.97
15 37 6.5e-07 0.00036 24.1 0.5 3 23 635 655 633 655 0.97
16 37 6.1e-05 0.034 17.9 1.4 1 23 661 683 661 683 0.99
17 37 2.8e-05 0.016 18.9 0.4 1 23 689 712 689 712 0.96
18 37 0.0001 0.056 17.2 2.7 1 23 718 740 718 740 0.98
19 37 0.45 2.5e+02 5.7 6.6 1 23 746 768 746 768 0.96
20 37 1.2 6.5e+02 4.4 0.8 1 8 774 781 774 785 0.93
21 37 0.0016 0.87 13.5 2.5 2 23 903 924 902 924 0.96
22 37 4.3 2.4e+03 2.6 3.7 2 23 927 945 926 945 0.87
23 37 0.0051 2.8 11.8 0.5 1 23 951 973 951 973 0.96
24 37 3.7e-05 0.02 18.6 4.4 1 23 979 1001 979 1001 0.99
25 37 0.0023 1.3 12.9 0.7 2 23 1010 1031 1009 1031 0.98
26 37 4.8e-06 0.0027 21.4 1.0 3 23 1039 1059 1037 1059 0.97
27 37 0.00013 0.07 16.9 1.0 1 23 1065 1087 1065 1087 0.99
28 37 0.066 37 8.3 2.4 1 23 1093 1115 1093 1115 0.98
29 37 0.00027 0.15 15.8 1.4 1 23 1121 1143 1121 1143 0.97
30 37 1.8 1e+03 3.8 0.2 2 10 1152 1160 1151 1162 0.90
31 37 6.9e-05 0.038 17.7 0.7 1 23 1294 1316 1294 1316 0.99
32 37 0.00068 0.38 14.6 1.3 1 23 1322 1344 1322 1344 0.98
33 37 0.001 0.58 14.0 0.8 2 23 1351 1372 1350 1372 0.97
34 37 6.9e-06 0.0039 20.9 1.4 2 23 1379 1400 1378 1400 0.97
35 37 2.2e-07 0.00012 25.5 1.0 1 23 1406 1428 1406 1428 0.99
36 37 0.077 43 8.1 3.8 1 23 1434 1456 1434 1456 0.98
37 37 0.0014 0.79 13.6 4.4 1 23 1462 1485 1462 1485 0.96

Sequence Information

Coding Sequence
ATGGTGTATGCAACTGAACAGAAAcaagaagaaaatatttgtacaaatgAGgGTATTTATGAAATCAATACAAATGTTTTACCAGATGATGTTGCCTCCGAAATTAAAATCGAATCGCTCCTCTCGACAACAACGGGTCAACATCAACCAAAGGAAAGTGATTTCGTGATAAAAGATGAATTGGTAGCTACGATGGATGAACAAATTCCACAATATGTactgaattttaatgaaaataacgaTGATTATATTGTGGAGAATGATAAAAATACTGACGATGAAACAGAGGATGCTgatgataaaaattttataattggcgAGCTTCCAGATACTCCTGcagaaaataaaatcgataataATAGTATCATAAACAAAGATGACAAAGAATATACATGTAGAACATGtatgaaaacttttaaaacacGTCGGGCATATTCGaaacatataaatattcataaacgGGAATGTCATCTCTGTGGGAAAATATGCAAAGATCTCGTGAAACATATGGCCAAACATACAGGAGAACGTATATATCAATGTACCGAATGTGGATCACAATTCAAAAGCATGGAAAGATTAAAGGAGCACCAGGCAGTACATTCAGACGATCGTCCATTTGCGTGCGATTCATGCACCAAGAAATTTAAAACACGGAAACGTCTTCGAGATCATGTTCGAACTCATTTATCGAACGCAGATCGACCTATAAAGTGTGAAATTTGTGGCAAAGGATTTctaacgaatttaattttaaaaatacatgcTCGTACACATACCGGTGAAAAATCGTCTATTTGCAATATATGCGGCAAATCGTTTGTTTCaaataatacattaaaaatacatattcgtACACATACTGGAGAAAAGCCTTATCAATGTCCGTTATGTGATAATAAATACAATTCCTCAGGCAGTTTAAATATTCACAAACGAATACATACCGGTGAAAAACCTTACAAATGTCAACACTGTTCAAAAGGTTTTTACGATTTGGCGACATGTCGAACACATGAACGAACACATACAGGAGATTATCcgtataaatgtaaaatatgcGGCAAAGCACATAATCATACAAtgTCAATCCAAGTTCTAAGCGACATGGTGATTTATTCTCTAAAACAACGGATATTTATGGTAAAACGCTACTAtcagaatggaaattcaatcgAAAAAGTTCAAGATGAATTTATAATCGAATATAATCAACATAACAAACCAACCGATGAGAATATTGTGGAGTTTGTTCAGCTGTTTGAGAATTGTGGCAGTGTCTTTACAAATAGCAATACTATTGTTAAATTAGAGgGTGATGGCGAAGTATCTACGCatcatattttagaaataaaaccggAAATTATACTTCAATCAAATGATAAGGaatcgttaaaattttcagaaaccGGAAGCAATACGGATGAATATTTAGATAGTGGTGATAAATCAGAGACGGATGATAGTATCGAAGAAACTATTGACAATAATATGTCATGTGCGCAGtgcagtaaaaaatttaaaacgaaatggGCATATTCGAATCATTTGAATGTACACGAAAAGGAAtgcaaaatttgtaataaaagaTGCCGTAATATGGTTAGACATATGACTATGCATACAGGGGAACGTTCATATGAATGCAGCGAATGTGGGTCCAAGTTCAAGAAAAGCGAACAGCTAAAAGAGCATGCGGTTGTGCATTCCGATGAAAAACCGTTTAAGTGCAACATttgccaaaaatcatttaagacaCCAAAACGTTTAAAGGCACACAAACCGACACATTTAACGAGTGCTGAGCGTCCTGTTAAATGTGAAGTATGTGGCAAAAGATTTCTTTCGAAACTGTTACTAAAACTTCATTCTAGGGTACATTTCGGAGAAAAACAatcaatttgtaatatttgtggtCAATCATATGCAACAAAATACACATTAAAAATTCACATGAGAACACATACGGgcgaaaaaaattacaaatgtcCGTTCTGTGACAACAAATACAGCACATCAGGTAGTTTAAATAGCCACAAAAGAATTCATACAGGTGAAAAACCATTTGTATGCGACATATGCGAGAAATCATTTGTTACgaataatacattaaaaattcataaagataCCATACACACTGGAGACAAGCCGCATCAATGCCCATTCTGTGATAAGAAATACAATTCAACGAGCGGTTTGAAAATTCACAAGCGAGTGCACACCGGTGAGAAACCTTATTTATGCCAGCATTGTTCAAAAGCTTTTTATGATTTGACGACATGCCGCAAGCATGAGCGAACGCATACTGGGGAAAAAccttataaatgtaaaatatgtgGGAAAGCTCATAATCAATTAGTAAAACACTATTATCAGTATGGTAACTCAACTGAAAaggttcaaaataaatttataatcgaATATAATCATTATAATAAACCAACCGATGAAAATATTGTGGAACTTGTTCAACTGTTTGAGAATTTTGGTAGTGTCCTAATAAATAATGATGATCATATAAAAATAGAGGGTGATGCAGAAGAATTGGCGTATAACAGTTTCGGAATCGAACCGGAAGTTAATCTATTTAATGATGAAGAAACGAAATTTTCAGAAACAGAAAACGAAGTAGATTTGGATGGATATTTAGAAGGTTGTAATAAATCAGATTCGGATGATAGTGTAGAAAAAACAACCAGCGAAATTTCATGTGAGCAATgtaatagaaaattcaaatcgaaACGGCTTTTTTCACAGCATTTAAGTATGCACGAAAAGGAAtgcaaaatttgtaagaaaaaatgCCGAGATTTGGTGAAACATATGGCTATGCATACAGGAGAACGTCTTTATCAATGTAGTGAATGTGGGTCTCAGTTCAAAAGCATGGATCGGTTGAAGGAGCACACGGTTGTGCATTCCGATGAAAAACCGTATAAATGTGACACttgccaaaaatcatttaaaacacGGAAACGTTTAAAGGAGCATGAACGAACTCATTTAACGAATGCTGAGCGGCCCGTTAAGTGTGAAGTCTGTGGTAAGGGTTTTCtgacaaaacttttattaaaatctcATTTTAGAACGCATACAGGAGAAAAGCAATCAATATGTAATATTTGTGGCCTATCATATGCTTCTAATCATACACTCAAAATCCATATGAGAACACATACGGGCGAGAAACCTTATAAATGCCCGTTTTGtgacaataaatataatacatcCGGTAGTTTAAATATTCACAAAAGAATTCATACAGGTGAAAAACCGTACACTTGTAAAACTTGTGAAAAAGGATTTTACGACCTGGCTACCTGTCGGGCGCACGAACAAACCCATTCAACAGAATatctttttaattgtaaaatttgtaataaagctCTGAAAACACGTAAAAGTTTAAGGGAGCATGAAAAAATTCATCGGCCAAAAACAGATCTACCCATCAAATGTGAAGTATGCGGGAAAGGATTTGATCTCTTTACCGTAATCATTAAAAATCCCCTCGAAATAGACGAAAATTATAATTGCGAAGATTCGATCAAAAAAGAAGATGATCACTCAGATCACGGTACCGAAGACAACGTTAATGATGAGCATGATAACGATAACGATTATGAATCTGATAATAAGGATGATGTCACCGATATCATAGCAGCTAGTGTCAAATATGATGAAGACTGGGCGGATGTAAAACATGATGACGATGAGGTTGCAATTGCAAGTGATAaggtaaaaattgaaatacccgatttaaatatttcagaagtGAGAAGTTTGGTCACAGAAGAATTGGAGCCAAATACAGACGATTTGAAACCGCATAAAAAGAtagttaaaaaagaaaaacgtgTTTTTAATGGCGACCGAACGTATCAGTGTACGGAATGTGGAACACAATTCATAAATATGGTCcgtttaaaaaaacatatggTGACGCATTCCGATGAACGTCCATTCTCATGTGACATCTGCCAGAAACCATTTAAAACGCGGGACCGGGTGCGAGAGCacaaaaaaatccatttagCCGATCGCCCtgtaaaatgtgaaatttgtgGAAAAGGATTTTTACACAATGGCCGCCTCCGAAAACACATGGTTATGCACACAGGTGAAAAACCATCGGTGTGTAGTGTTTGTGGTAAATGTTTTGCATCCAATGAATCGCTAAGGGTACACAATCGAACGCATACTGGTGAAAAACCTTATAAGTGTAGCTATTGTGGCAAACAATTTGTTACATCGGGTAGCTTAAAAAATCATGTGCGTATACATACGGGTGAAAAACCATACAACTGCCAGTATTGTGAAAAACGATTTTATGAATCGGCCTCGTGCCGTGTCCATGAACGAACGCATACAGGTAATTATccatatatttgtaaattatgcgGAAAGGCTCATAATCATCCAAGTAATTTAAAATCTCATATGAAACATGCCCATCGTGAGGATCAAAGCTAA
Protein Sequence
MVYATEQKQEENICTNEGIYEINTNVLPDDVASEIKIESLLSTTTGQHQPKESDFVIKDELVATMDEQIPQYVLNFNENNDDYIVENDKNTDDETEDADDKNFIIGELPDTPAENKIDNNSIINKDDKEYTCRTCMKTFKTRRAYSKHINIHKRECHLCGKICKDLVKHMAKHTGERIYQCTECGSQFKSMERLKEHQAVHSDDRPFACDSCTKKFKTRKRLRDHVRTHLSNADRPIKCEICGKGFLTNLILKIHARTHTGEKSSICNICGKSFVSNNTLKIHIRTHTGEKPYQCPLCDNKYNSSGSLNIHKRIHTGEKPYKCQHCSKGFYDLATCRTHERTHTGDYPYKCKICGKAHNHTMSIQVLSDMVIYSLKQRIFMVKRYYQNGNSIEKVQDEFIIEYNQHNKPTDENIVEFVQLFENCGSVFTNSNTIVKLEGDGEVSTHHILEIKPEIILQSNDKESLKFSETGSNTDEYLDSGDKSETDDSIEETIDNNMSCAQCSKKFKTKWAYSNHLNVHEKECKICNKRCRNMVRHMTMHTGERSYECSECGSKFKKSEQLKEHAVVHSDEKPFKCNICQKSFKTPKRLKAHKPTHLTSAERPVKCEVCGKRFLSKLLLKLHSRVHFGEKQSICNICGQSYATKYTLKIHMRTHTGEKNYKCPFCDNKYSTSGSLNSHKRIHTGEKPFVCDICEKSFVTNNTLKIHKDTIHTGDKPHQCPFCDKKYNSTSGLKIHKRVHTGEKPYLCQHCSKAFYDLTTCRKHERTHTGEKPYKCKICGKAHNQLVKHYYQYGNSTEKVQNKFIIEYNHYNKPTDENIVELVQLFENFGSVLINNDDHIKIEGDAEELAYNSFGIEPEVNLFNDEETKFSETENEVDLDGYLEGCNKSDSDDSVEKTTSEISCEQCNRKFKSKRLFSQHLSMHEKECKICKKKCRDLVKHMAMHTGERLYQCSECGSQFKSMDRLKEHTVVHSDEKPYKCDTCQKSFKTRKRLKEHERTHLTNAERPVKCEVCGKGFLTKLLLKSHFRTHTGEKQSICNICGLSYASNHTLKIHMRTHTGEKPYKCPFCDNKYNTSGSLNIHKRIHTGEKPYTCKTCEKGFYDLATCRAHEQTHSTEYLFNCKICNKALKTRKSLREHEKIHRPKTDLPIKCEVCGKGFDLFTVIIKNPLEIDENYNCEDSIKKEDDHSDHGTEDNVNDEHDNDNDYESDNKDDVTDIIAASVKYDEDWADVKHDDDEVAIASDKVKIEIPDLNISEVRSLVTEELEPNTDDLKPHKKIVKKEKRVFNGDRTYQCTECGTQFINMVRLKKHMVTHSDERPFSCDICQKPFKTRDRVREHKKIHLADRPVKCEICGKGFLHNGRLRKHMVMHTGEKPSVCSVCGKCFASNESLRVHNRTHTGEKPYKCSYCGKQFVTSGSLKNHVRIHTGEKPYNCQYCEKRFYESASCRVHERTHTGNYPYICKLCGKAHNHPSNLKSHMKHAHREDQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-