Tver128495.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282560.1:43731973-43732383[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.0011 0.96 12.5 0.0 2 37 73 109 72 117 0.79 2 2 0.00061 0.55 13.3 0.0 15 34 118 136 115 136 0.91
Sequence Information
- Coding Sequence
- ATGGTagtgtattcgcttgaacaacgctgggaaacattgaaacattacttcgaaaatcatGGTAATGTAACAGAATGTGTGCGAAAATTGTGTGCGGATTTCGGAAGAAACGAAGCGCCGGGAGCTCCATTTGTGcgttattttgtgaaaaaagttAGAGAAACAGGCTTGCTAATTAATAAACCAACACGAACCAAGCAGCCAATCAAGCGTACACCTGAAAATGTTGATGCTGTAGCCGAGAATGTGCGTGAGTCGCCGGGAACGTCAACTCGTCATCGTGCTCAAGAATTGAACATTTCGCGTACAACATTGCGACGAATTCTGCATAAAGACCTTGGTATGTCGCCGGGAACGTCAACTCGTCATCGTGCTCAAGAATTTAACATTTCGCGTACAACATTGCGGTGA
- Protein Sequence
- MVVYSLEQRWETLKHYFENHGNVTECVRKLCADFGRNEAPGAPFVRYFVKKVRETGLLINKPTRTKQPIKRTPENVDAVAENVRESPGTSTRHRAQELNISRTTLRRILHKDLGMSPGTSTRHRAQEFNISRTTLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -