Tver059412.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282558.1:432092267-432094114[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-08 1.6e-05 27.8 0.0 4 43 20 59 17 61 0.89 2 2 5.1 4.6e+03 0.8 0.2 11 23 136 149 136 151 0.80
Sequence Information
- Coding Sequence
- atgcctacgatttataaaaaaaaactaaactcgagACGGGCAGCTTGGCTAGAATCCGATCTCAAAGCGGCAGTTaaggatattaataataaaatgttatcgATTAATGCAGCGTCTAAACGATACAATATACCGTCAACTACATTAAGAAGACAGCTTAAAAACAAAAGTGATACGAAACCAGCATTGGGAGCTTCTTGTTGTTTAGGCGTCGAGTTTGAAGATAAGATTGTTGGCCATATAAAAAATCTTCAAGCGCATGGGTTTGCTCCAACAAGAAACGAGGTGCGAGGCATGGCATTCGGACTTGCACAGAAATACAATATAgcacataaatttaattctgaggAGAAAAAAGCTGGCAAAGCATGGTTCACACTTTTTATGAAGCGTCATCCAAACTTGGCTGTAAGAAAATCCGAAGGAGTTTCCCAAAATCGTGCCCAAGGAATGAATCGTAAAGAAATatccgattattttattttgttagaaaaaattttaatcgaacACGAATTAATATCAAAACCAGGACACATTTTCAACATGGACGAAACCGGATGCCAGTTAAATAATCGGCCTGGGTTTGTAATAGCCGAAAGAGGATCTAAAAATATACCAGCAGTAACATCTGCTGAAAAGGGAGAAACAATTTCAGTAATTGCTTGTTGTAATGCCGAAGGCAATTTTTTGCCTCCAGCTTGtgtttttaaaggtaaaaataagaaaactgaATTTGAAGATGGCATGCCCCCAGGTTCAGTGGTGTACATGGGTGGTAAATCTGCGTATGTCAACTCAGACATTTTCTACACTTGGCTTAAGCAACATTTCCTTCCAAGAAAACCTCaaggaaaagttttaattatattagatGGCCATTCGTCACATTGCAGTAACACCGATATGTTGGAGTTTGCTGTGGCAAACGAAATAATTCTACTATGTTTACCGCCacatacaacacaatttttacagcCGTTGGAtcgatgtttttttaaatccttcAAATCGCATTACTACGCGGCAtgcaatttgtttataaaaaacaatccaaatagGAAGATTTCTCGTTTacaatttggaaaattgttAACATCTACTTGGAACATGTCTGCAATTCCAAAAAATGGTATCTCAGCATTTTCAGCCACTGGTATTTTCCCATTTAATCCTGAAGCCATTCCGGATTACGCATTTATTCACATGCGCGTTACTGATGTCGAACAAGGCGTGGAAACACAACATTTGGGTATATCTTCAGATGCTTCTATAATAATAAGCGAATTAACATCTACAGTTGGAAATTTTCCTGAAAATACATCGACCGAGGCTTCATCTTTTCAGTCACCGGTAACTCCTCAGAAAAATCAACAGTCCGATTTGGAAGTGATTGACAATATGAACATCAGCGACTTAACCCCTGGAAAAATGTTAGACATAATATCTCCGATACCGTCAACTTCCAAgggtaaaacaaataattccagaaaacaaaaaactcgTGTATTGACTGCAGTAAATAACATTAAAGaactcaaattaaaatcaataaagcgCAAAAtaacacacacaaacaaaacgGCAAAAGTACAAAAGAATCGGAAAAAAGTTGTACATGAGTCTTCAACTGAAGATGAGGATATTACTATACCATTAGATGATGAATCAGATGGCTTGGAGGACTTTGAAGAGAATATTTGCGCTGGATGTGGAGAGGATTATAATTCCACTTCTAAAAAGGACGACTGGATTCAGTGCATATTATGTAATTTGTGGTCGCATGATACCTGCACTTTTTTTGTCAATACATGCAACAAATGCGGCAAGCAAAATGTTAAGAAACACTAA
- Protein Sequence
- MPTIYKKKLNSRRAAWLESDLKAAVKDINNKMLSINAASKRYNIPSTTLRRQLKNKSDTKPALGASCCLGVEFEDKIVGHIKNLQAHGFAPTRNEVRGMAFGLAQKYNIAHKFNSEEKKAGKAWFTLFMKRHPNLAVRKSEGVSQNRAQGMNRKEISDYFILLEKILIEHELISKPGHIFNMDETGCQLNNRPGFVIAERGSKNIPAVTSAEKGETISVIACCNAEGNFLPPACVFKGKNKKTEFEDGMPPGSVVYMGGKSAYVNSDIFYTWLKQHFLPRKPQGKVLIILDGHSSHCSNTDMLEFAVANEIILLCLPPHTTQFLQPLDRCFFKSFKSHYYAACNLFIKNNPNRKISRLQFGKLLTSTWNMSAIPKNGISAFSATGIFPFNPEAIPDYAFIHMRVTDVEQGVETQHLGISSDASIIISELTSTVGNFPENTSTEASSFQSPVTPQKNQQSDLEVIDNMNISDLTPGKMLDIISPIPSTSKGKTNNSRKQKTRVLTAVNNIKELKLKSIKRKITHTNKTAKVQKNRKKVVHESSTEDEDITIPLDDESDGLEDFEENICAGCGEDYNSTSKKDDWIQCILCNLWSHDTCTFFVNTCNKCGKQNVKKH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01459458;
- 90% Identity
- iTF_01459458;
- 80% Identity
- iTF_01459463; iTF_01459464; iTF_01459417;