Tver162772.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tipula vernalis
Gene Symbol
-
Assembly
GCA_958295665.1
Location
OY282560.1:278987216-278989687[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.5e-09 3.2e-06 30.1 0.0 4 35 12 44 9 46 0.93

Sequence Information

Coding Sequence
ATGCCTAAGAAACGCAACACATATGAAGAATCTGATTTACAAAAGGCTTtacaacacataaaaaatggaaaaatatctaaaaaggcGGCTTCGAAGCTTTATAATATACCTAGATCAACATTACAATTTCGTCTCGgacctaatttttcaaaaacacgGCCAGGTCCAGGTACAGTTTTGacggaagaagaagaagaacgaATAGTTGATTGGATTAAAGTTTCTCAAAAAAAGGGTTTTCCGAAGCGAAAGGAGGATGTTACTAGCGCAGTGAAATACTTTCTGGAACAAACCGATAGATCTCATCCCTTTGGAGAGGCCAACATACCAGGAAAAGGGTGGTTCGCATCGTTTTTAAAGCGTCATCCTTCTCTTTCGTTAAGATTAACTGACCCTGTTTCTTCAGCGAGCGCTACGGTAGCAATTTCCGATATTCATTCGTGGTTTGATtctatcaaaaaatttctaactgAGCAAAATTATATGGATATACTTAAAGACCCTACCAGAATTTTAAACGGCGATgagacaaattttttactttgtccaaaaaccaaaaatgttctAGCTGCAAAGGGAGCAAAAAATGTGTATGAAGTGGACAGAGGGCTAGCAAAATCGAATTTGACGGTTATGTTCACATTTTCGGCCGCTGGATTAATACCACCTCCTATGGTTATATACCCATACAAAAGAATTCCCGAGGAAATTCGGAAATCATTACCAAAAGGATGGGGCTTGGGCGTAAGTGATAATGGATGGATGACTAGAGAGATTTTCTATGAATATATCTCTAAAGTTCTCCATCCATATCTCTTGCAGCTAGGAACTACATTCCCAGTAATTTATTTTGTCGACGGACATGCAACACATCTGACATTAGCTGTCAGCGAGCTATGTGtgaagctaaaaattattttggttgcttTGTACCCCAACGCTACCAGAATTCTACAACCGGCTGATGTCGCTGCATTTAAACCACTTAAGTCGTCTTGGAATAATAAGGTATTAGAATGGCGTAGAAACAATCCTATGGAATCGCTCACTAAAGAAAAGTTTGCACCTCTTTTATTTGAAGCGATACACAACAGCATTTCTGTAGAAACTATTAAAAAAGGATTTAGAGCCTGTGGTCTTTATCCATTTgataaatattcaataaattcatcaaAGTGTTTGGGGAGATCGTCCGTAAAATCTACCAACAGTCGTGAACAAAATCAGGCCACCACGCAAGATGATGCATTTAAAATGCTTTGCGCAACTGTTGGTCAAAATAAAGTCGAGATATTTGAAAAACTCGATAAAGGAGAACTTGAAATTGACAGTTGTAGCGAAGACTTTCTTCTTTTATATGATGTATTTAAACAACTAAGATTTGGAGTAAAAccgaaacaaataatttgtaataaatcaacGCAAACAGAAGGTGAAACCCAAATTCCCGGAAATTCATCTATAgacattaattcaattaatgagTTTATATTGATAAACGATCCACTAAGCACACAGGTTCAAACCGAATTAATCAGTATCGATACTACTTTTTCGCCGAACAGCAATGTATTGAAGTACACCGAGATAACCCCATCAAACAATGTTTCTTGTATAACTTTGCCATCATATACAACCGGAGGAATAGAGGATTATTTAAACTGGCCGGAAACACCCATTAGAAAAGGATGTAAActaaatcaaaccaaaaaaccTTTTGTTGTCACGTCGCCTCTGTGGATTCAAcaggaaaaactgaaaaaagaaactaaacaaaaaattgaaagtgatAGAGAGAACCGAAAGGCTGAAAGAATAAAAAAcagggaattaaaaaaattacaaataaaagataaaccTAAGCGTACCAGAAAGgctaatccaaaattacaaccaTCGACAAATCTTCAAACCACTACAATAACACCCAACAAGGCCTTGGTGTCAATAGAAAATTATGTTGCACAAGAAATTATACATAATGTTACAAACATCAATGAACCTACTGCTAACActtcttttcaaataaatagCTTAACTGGGAATTTCCGCTCGGATAAAGACAAGAGAATCAGCGAACTACAAAACGTAGATTTCGGGTGTAATCAACTGTCTAGTAActtggaatttaaaaatgataacaaGTCTCCCACAAACAGTAAGAAATTGTTTGGCGAGAATTTATCTCCAGAACTTGGTGACGTTAGGATTTGTGATCCACCCACTGATCAGCAGCACCACGTACGAAATCTGTTCCTAGTTAAAACCAAACATGACTTTGGGAGTAATACCCCAGCAAGCGGCAGTATGTGCTACTACTGTACTTTTGCACTTTCCAAAAATTGTACctctgaaaattttggaataaaatgtaGCACATGTACTCGCGAATTTCACTTAAAATGcctaataaaactgaaatataaaTACATTCCAGTATTCGAATGCAATGGATGCAAAAAACTTGATTAA
Protein Sequence
MPKKRNTYEESDLQKALQHIKNGKISKKAASKLYNIPRSTLQFRLGPNFSKTRPGPGTVLTEEEEERIVDWIKVSQKKGFPKRKEDVTSAVKYFLEQTDRSHPFGEANIPGKGWFASFLKRHPSLSLRLTDPVSSASATVAISDIHSWFDSIKKFLTEQNYMDILKDPTRILNGDETNFLLCPKTKNVLAAKGAKNVYEVDRGLAKSNLTVMFTFSAAGLIPPPMVIYPYKRIPEEIRKSLPKGWGLGVSDNGWMTREIFYEYISKVLHPYLLQLGTTFPVIYFVDGHATHLTLAVSELCVKLKIILVALYPNATRILQPADVAAFKPLKSSWNNKVLEWRRNNPMESLTKEKFAPLLFEAIHNSISVETIKKGFRACGLYPFDKYSINSSKCLGRSSVKSTNSREQNQATTQDDAFKMLCATVGQNKVEIFEKLDKGELEIDSCSEDFLLLYDVFKQLRFGVKPKQIICNKSTQTEGETQIPGNSSIDINSINEFILINDPLSTQVQTELISIDTTFSPNSNVLKYTEITPSNNVSCITLPSYTTGGIEDYLNWPETPIRKGCKLNQTKKPFVVTSPLWIQQEKLKKETKQKIESDRENRKAERIKNRELKKLQIKDKPKRTRKANPKLQPSTNLQTTTITPNKALVSIENYVAQEIIHNVTNINEPTANTSFQINSLTGNFRSDKDKRISELQNVDFGCNQLSSNLEFKNDNKSPTNSKKLFGENLSPELGDVRICDPPTDQQHHVRNLFLVKTKHDFGSNTPASGSMCYYCTFALSKNCTSENFGIKCSTCTREFHLKCLIKLKYKYIPVFECNGCKKLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01459447;
90% Identity
iTF_01459447;
80% Identity
iTF_01459453;