Tver169717.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282560.1:320819930-320821525[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.6e-10 7.8e-07 32.0 0.0 4 37 11 43 10 50 0.87
Sequence Information
- Coding Sequence
- ATGCCtgcgaaaagaaaatataatgtaCAGGATATAGAAAAAGccattgaacaaattaaaaatggaacttCCATTCACGTGGCTGccagaatatttaatattccCCGGCCAACGCTTCAACATAGACTACATAATCGTGCCAAAAAGAGTACAATAGGGCCTGCACCAGTATTAACAACCTTAGAGGAAAATGATATTGTACATTGGATCTTTGAAAATTATGAACGGGGATTTTCAAGAAGGAAGCATGAAGTACGTGCGGTGGTCAAGGAATTTTTAGAATCAAATCCaagaaaaaatatgtttgttgaCAATATGCCAGGAGATACATGGTATAACGGATTTTTAAAGAGGCACCCAGAGGTATCGATAAGGACACCAGAGGCAGTAACCAATTCCAGTGCGTGTGTTTCTGAACATAATATAAAAGGCTGGTTCAAACAAATTCAGGATTACTTTTCATCAAAGGATCTGAATGATGATGTTCCTAAAGATCCAACTAGAATATTTAACAGTGAAGAGTCTGGGTTCTTACTATGTCCGAAAGGAGGAGCCGTTTTGGCACCCAAGGGAGCAATCAATGTATACGAAACCGATAAAGGTCGAGCCAAGGAAAGTGTTACCGTTATGTTCACTTTCTCTGCTGATGGCATTGTTATTCCTCCGATGATAGTGTTTCATTACAAAAGAATACCAAAAGATATAATAGATTCAATTCCGGAGGGAATAACATATACAAAAACAGATTCGGGATGGATGACATCGGAAACATTTATGTATTACATACAGGATGTTTTATATCCTACgctaatatcgaaaaatattaCGTTTCCAATAGTTCTCTACGTCGATGGTCATAAGACGCACCTAAGCTATGCACTTTCCAAATTGTGCGCactacttaaaataattttaatatgtttgtaTCCAAACGCAACAAGAATCCTTCAACCTGCTGACGTATCAATATTTAGGCCATTGAAATTAGGTTGGACCAAGGAAGTCCAAATATGGAGAAGTACCAACCTCGATGAACAGTtctcaaaaaaacattttgcacCAATGTTAAAAAAAGTAATTGGTAAATATGTCAAACGTGATACAATAGTTAATGGGTTTCGCACTTGTGGGCTTTATCCCTTcaatgaaaatgcgattgattATTCTAAGTGTCTCGCAAATTCAAAACGAACTTCGAAGGAGATTGAACCAGAAGGAAGCAATTTATTCGCAGAAACCACAAGCACCATTAGTTTAAcggaatttattgaaattgttggACCTACCAAACTTAAAGAGCTAGACGAAATGGAGCAGAGTAATAGCACTAAGTCGGAAGATTTCctgttattacaaaaaatatatggaagtttaaaagtaaatttgacGGGAAACATTgatACTCCAACAAACGATATGAACGTGCGGGTTACACCGGAAAGTGGGGCAAAAAATTTGGTAAGAAAGTTATTCTCTAATGTTAGTACCTGGCAGCGTCGCTAA
- Protein Sequence
- MPAKRKYNVQDIEKAIEQIKNGTSIHVAARIFNIPRPTLQHRLHNRAKKSTIGPAPVLTTLEENDIVHWIFENYERGFSRRKHEVRAVVKEFLESNPRKNMFVDNMPGDTWYNGFLKRHPEVSIRTPEAVTNSSACVSEHNIKGWFKQIQDYFSSKDLNDDVPKDPTRIFNSEESGFLLCPKGGAVLAPKGAINVYETDKGRAKESVTVMFTFSADGIVIPPMIVFHYKRIPKDIIDSIPEGITYTKTDSGWMTSETFMYYIQDVLYPTLISKNITFPIVLYVDGHKTHLSYALSKLCALLKIILICLYPNATRILQPADVSIFRPLKLGWTKEVQIWRSTNLDEQFSKKHFAPMLKKVIGKYVKRDTIVNGFRTCGLYPFNENAIDYSKCLANSKRTSKEIEPEGSNLFAETTSTISLTEFIEIVGPTKLKELDEMEQSNSTKSEDFLLLQKIYGSLKVNLTGNIDTPTNDMNVRVTPESGAKNLVRKLFSNVSTWQRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01455587;
- 90% Identity
- iTF_01455587;
- 80% Identity
- -