Tver141946.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282560.1:140777843-140778702[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.9e-10 2.6e-07 33.6 0.0 3 38 15 49 14 57 0.87
Sequence Information
- Coding Sequence
- ATGGCAACTAAAAATAGTGAGGGAGCTAAAGCGAATTTTAAAGATGCCTTAAAAAGTGCCTTAGAAGCTGTAAAGAATGGCATGACTGTTCATACGGCCAGTAAAACTTTCAATGTTCCCAAAACAACATTATACAACCACTCCAAAAAACTAAGCGCTGACGTAAAACAAGGGGCACCAAGTGTTTTTTCTAAAGAACATGAGGGACATCTGTGCTCATGGATTGACCACATGgccaaaattgaatttcccatgtcgaaagatattttattagatTCTGTGCAATTACTTgctaaaaatttgcaaattgcaTACAAATTTAGAGGCGGTAGACCAGGTCGCCACTGGTACGAAGGTTTTTTGAAAAGAAACCCTTCAGTTTCTAAAAGGGTTtcgcaatatttaattaaaagtcgTGCACAAGTTAccgaacataaaataaaagaatggtTTACCAAAATTACAGTTTACCTGGAAGCTAACGGATATTTACCTATATTCGATCATCCGGAGCGTATCTTCAATTGTGACGAAACCGCATTTTTTGTAAGTCcaaaagaaaattctgttttagtCACAAAAGGGCAGAAATCAGTTTACTCATTAGTAGCCAACGacgaaaaagaaaatgtaacaaCACTTGTGATGGGCAATGCACTAGGGAAACGTGGTCCCCCAATGGTGGTTTTACCGTATAAGAGAATTCCTGTTAGTGTAGCTAAAAGTATGCCAGCCAGTTGGAGAATTGGAAGAAGCGATTCGGGTTGGATGACAGGGGAATTGTTTTTGAGTACATAG
- Protein Sequence
- MATKNSEGAKANFKDALKSALEAVKNGMTVHTASKTFNVPKTTLYNHSKKLSADVKQGAPSVFSKEHEGHLCSWIDHMAKIEFPMSKDILLDSVQLLAKNLQIAYKFRGGRPGRHWYEGFLKRNPSVSKRVSQYLIKSRAQVTEHKIKEWFTKITVYLEANGYLPIFDHPERIFNCDETAFFVSPKENSVLVTKGQKSVYSLVANDEKENVTTLVMGNALGKRGPPMVVLPYKRIPVSVAKSMPASWRIGRSDSGWMTGELFLST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01455665; iTF_01455599; iTF_01459408;
- 90% Identity
- iTF_01459408;
- 80% Identity
- -