Tver039018.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282558.1:280221295-280221888[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-10 1.7e-07 34.2 0.0 4 36 15 47 12 54 0.90
Sequence Information
- Coding Sequence
- atggCTCCAACTAATTCACGTAAATTGAAATATACGGCAAATCAACTAGAACAGGCTCTTGTTGCGGTAAGAAATGGTATGAAATTAAGAAAAGCCAGCAATCAATTTGGAATTCCATTCAGTACACTCCACGACAAGTTTAACGGAAAAAGTGCTCCCAAATTACAACACAGTGGAAGAGAATTGTGCCTTGGTGAAAGTGTCGAAAATGATTTGATGATGTGGCTACTGGACTGCTCGAAAAAGGGCTTTCCCATAACTAAGAAGTTGCTTGAAGATGCTGTTCAAAAACTTGTTATTAAGCTGAATATCAAGACACAGTTCATTAACAAAAAACCGGGACGGAAATGGTTTGAAAAATTCATGCAACGGCATAAAAACTTATCATTAAAACGAGCGGAGTATATCAACAAGGCAAGAGGAAGTGTAACTGAGGCAAATATTCGCATATGGTTCGATGAAGTGCTAGATTTACTAGGTCCAGACGCAACTGCCCTTCAAAACCCAAAACAAGTGTACAACATGGATGAaactggattttttttaatgccaaCTGGAGATCGAATTATTGGACCAAAAGGTACCACAGTGTAA
- Protein Sequence
- MAPTNSRKLKYTANQLEQALVAVRNGMKLRKASNQFGIPFSTLHDKFNGKSAPKLQHSGRELCLGESVENDLMMWLLDCSKKGFPITKKLLEDAVQKLVIKLNIKTQFINKKPGRKWFEKFMQRHKNLSLKRAEYINKARGSVTEANIRIWFDEVLDLLGPDATALQNPKQVYNMDETGFFLMPTGDRIIGPKGTTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01459398; iTF_01051855; iTF_01053088; iTF_01051845; iTF_01051842; iTF_01051844; iTF_01053079;
- 90% Identity
- iTF_01053088;
- 80% Identity
- -