Tver061553.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282558.1:450799495-450800205[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.8e-10 6.1e-07 32.4 0.0 4 44 20 60 17 61 0.93 2 2 2.9 2.6e+03 1.6 0.2 12 23 137 149 136 151 0.77
Sequence Information
- Coding Sequence
- atgcctatgatttataaaaagaaaCAGAACTCTAAACGGGCTGCTTGGCTAGAATCCGATTTAAAAGCGGCCATTAaggatattattaataaagtttcATCCATTAATGCAGCGTCCAAACGATACAATATCCCGTCCACGACATTAAGAAGgcggttaaaaaataaaaatgacaagaaACCCGCATTGGGTGCTTCTTGTTATTTAGGCGACAATTTTGAAGAAAAGATCGTACGCCATATAAAAAATCTACAAGCACACGGTTTTGTTCCAACAAGAAACGAGGTGCGGGAAATGGCATTCGGACTGGCAGAAAAGTTCCGCAtagttcataaatttaattctgaggAGAAAAAAGCTGGCAAAGCGTGGTTTACACTGTTTATGAAGCTCCATCCTAACTTATCTGTAAGGAAATCCGAAGGTGTTTCACAAAACCGTGCTCAAGGAATGAGTCGTAGTGAAATatccgattattttattttgttggaaaCAATTCTACTCGAACACGATTTAATAGCTAAACCAGAACACATTTTTAACATGGACGAGACCGGATGTCAGCTAAATAATCGCCCTGGTTTTGTGATAGCCGAAAGAGGGTCTAAAAATATACCAGTAataaaatcatatgaaaaggGAGAAACAATTTCAGTTATTGCTTGCTGTAATGCAGAGGGGAAATTTTTTGCCTCCAGCCTGtgtttttaa
- Protein Sequence
- MPMIYKKKQNSKRAAWLESDLKAAIKDIINKVSSINAASKRYNIPSTTLRRRLKNKNDKKPALGASCYLGDNFEEKIVRHIKNLQAHGFVPTRNEVREMAFGLAEKFRIVHKFNSEEKKAGKAWFTLFMKLHPNLSVRKSEGVSQNRAQGMSRSEISDYFILLETILLEHDLIAKPEHIFNMDETGCQLNNRPGFVIAERGSKNIPVIKSYEKGETISVIACCNAEGKFFASSLCF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01459382;
- 90% Identity
- iTF_01459382;
- 80% Identity
- -