Tver143765.1
Basic Information
- Insect
- Tipula vernalis
- Gene Symbol
- -
- Assembly
- GCA_958295665.1
- Location
- OY282560.1:153225809-153226819[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0037 3.3 10.8 0.1 4 37 112 145 111 152 0.79 2 4 1.6e-09 1.5e-06 31.2 0.0 5 37 165 198 164 204 0.88 3 4 0.46 4.2e+02 4.1 0.0 7 38 214 245 213 247 0.89 4 4 5.2e-08 4.7e-05 26.3 0.0 2 39 268 304 267 309 0.91
Sequence Information
- Coding Sequence
- ATGTTCAAAGAACTTCCAAATTCCGACGATGAAGTAATTATTCATGTACCAGATTTTAATTACTGTtcagttaatttaattataaattttatttatatgggcGAAATCGAAATTAGTACAAACGATTTAAATACGTTTTTGGATATATGTAacttattttctttgaaaagctTTGATCGTCTTATTGACAAGGATGAAATGAACGCTAATGAAACTATACATCCCATAAATTGTAATGAGACattttccgaaaattataacacaattATACATCAGAAATATATTCCTCATTTACCAAATTACAATGAAGATACCAGCAGTAGTACACAATTGGAGTTTGATAAAGccattgaagaaataaaaaatggtgGAAAGCTTAGCGACGTTTCTCTAAAATATAAGATACCAAGATCAACTTTATATTTTCGTGCAAGAAAATGTAGTATACAACTACGTTTAAAAGAAAAcgcatttaataataaatatagacATCTTAACGAGGCCATGAATGCAATTATTAAGAATGGCATGAGTTATAAGAAAGCTGCAAAATTATACAACATTCCAGCTACAATACTTTGGCGAAACGCTAAATCATTAATGAACGAGGAACGaacaataacaaatataaataagtaCAAGGCAATTCAAGAACTACAGAATGGAAACTTGAATCTAAGAGAtctttataaaaaacataaagtatcaatttcaactttataccgtgaaaagaagaaattatgtTTGGAAGGGAAATTACCACAAGATTGCCTGCTACAAAATCGACAACGGTCAACAACGCAAGAAACTATTAATCAAGCCTATGATGCATATAAAAATGGAATGTTACAAACTCGGGCTGCAGCCTTATTTAACATACCAAAAACTACATTTTCGCGATACGTAAAACGCATGTCCATCGAAAACACTACCAATATTTCGAACAAGGATAAAGAAGATACTGTATTTGATGTTGATGCaacttattcaaaaaaattatttggaagctaa
- Protein Sequence
- MFKELPNSDDEVIIHVPDFNYCSVNLIINFIYMGEIEISTNDLNTFLDICNLFSLKSFDRLIDKDEMNANETIHPINCNETFSENYNTIIHQKYIPHLPNYNEDTSSSTQLEFDKAIEEIKNGGKLSDVSLKYKIPRSTLYFRARKCSIQLRLKENAFNNKYRHLNEAMNAIIKNGMSYKKAAKLYNIPATILWRNAKSLMNEERTITNINKYKAIQELQNGNLNLRDLYKKHKVSISTLYREKKKLCLEGKLPQDCLLQNRQRSTTQETINQAYDAYKNGMLQTRAAALFNIPKTTFSRYVKRMSIENTTNISNKDKEDTVFDVDATYSKKLFGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01460296;
- 90% Identity
- iTF_01460296;
- 80% Identity
- iTF_01460296;