Tunc000408.1
Basic Information
- Insect
- Tipula unca
- Gene Symbol
- -
- Assembly
- GCA_951394425.1
- Location
- OX596380.1:4759098-4761641[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.5e-05 0.0022 19.7 1.6 2 23 242 263 242 263 0.97 2 13 4.5e-05 0.0068 18.2 2.4 1 23 268 291 268 291 0.98 3 13 0.061 9 8.4 0.2 1 23 366 389 366 389 0.92 4 13 0.034 5.1 9.2 0.6 3 23 394 415 392 415 0.93 5 13 1.3 1.9e+02 4.2 1.5 3 23 433 453 431 453 0.94 6 13 6.3 9.4e+02 2.0 0.3 1 10 471 480 471 494 0.78 7 13 0.76 1.1e+02 4.9 1.9 2 23 562 586 561 586 0.92 8 13 4.7e-05 0.007 18.2 1.6 1 22 592 613 592 613 0.95 9 13 0.0022 0.33 12.9 0.8 1 21 620 640 620 641 0.95 10 13 1.3e-06 0.0002 23.0 1.7 3 23 650 670 649 670 0.99 11 13 7.1e-06 0.0011 20.8 0.2 1 23 676 698 676 698 0.97 12 13 0.00031 0.046 15.6 3.2 1 23 704 726 704 726 0.96 13 13 0.019 2.8 10.0 6.6 1 23 732 755 732 755 0.97
Sequence Information
- Coding Sequence
- ATGGAACTTTCCTCTGAATTGGAATTGGATATACCAAATATGTGCCGTGTGTGTTtattacaaaaagaaaaattaaataatatattttcaaattgcatTGTCGAGGGATATGTGATTCCTCTgcctgaaattataaaatcttgtTTAGATTTACATctGAGAAAAGAtgataaaaatttaccaaaaaatatctGCAGTTTATGTAAAATTCAGGTCATAAATTTCTATTCtttcaaacaaaaatctaaGAAGGTTGAGGAAGCACTAAAGAATTTATTGAGCGTATCGGGGTTGATAAAAGAAGAGAAAGAAACAGAAGATGAAAGACACCCAGCAAATAACAGTCCAATTAAAATGGAAGTGTCGTCGGTTTTGGATGAAGTGGCAGAGTATGCTGAGCATGAGATCCTCGATGAAAACGACAAGATAATTGAATTCTCAACAGTTGAGACTATTGAGCCTCATgaagaatttgaatatttgaataacGACAATATTGTTAAAACGATTACCGTAAAtcacgatgatgatgataataatgAAACTGTTGAATTACAGCAAGCGGATGTAAAATGTGAAGAGTTGGTGGAAGATGAAGAAGAAGTAAGGGAAGAGGAAATAGATCTTGGGCAGAATAATGAAGATTCTTGTGAGCTTTCAAACGATGATTTAAAGCTAGCAAGTATGAACGAATCTCCTGGGATAGTTGATAACTTATCAAATAGCTGtaatatttgtaacaaaaaatttgaaactataaacaatttaaagcgGCATTTAGACACtcataatggaattttttttaaatgccgaATTTGTCCAAAAATGTATGCACATCAAGCCTCTCGTAATCGCCACATGAGGATAAGACATTCAAAACAGGTTAAGGTTTTCATGTCACGAAGAGATAACCCCTTCCAGAGGAACGATCCATTGAATccaccaattaaattaaattctcgaGAAGATGCGAGCACAGATTTAACGAGCGCATGCACGACAGAAAGCATTTTAAACGATAAACATTCAGACGCCTATGAATTTCAACCGTTAACGGAGCTTGACGATGAACAGATTTATATGGATGTTTATGAATATTTGTGCACGATTTGCGAGGCAAACTTTAAGAACGAAAAACTGTTTGTGGAACATGCAAATTATGAACATCCAGATATATTTTGCAGCAAATGCCGTAAATTTTTTCCCAGCTCAGCCGATCGAAATGAACATTTATTACAAGAGCATACAAATGaatcatcaaacaaaaaatcaagtAACATTGCCTGTCGAACGTTTTGCcgattttgtcaaaaaaaattgaaatccgtGATTGAATTAAACACTCATAAAGAATTACacgaaactttaaataaatggaTCGAAAGTTCAGTGTCGCCCCTGATAGCATTTTTCACCTGTTACAAATGTAATACGATCTTTTTAAATGATCAAGGTCTACAGGGTCATAATATTGCCAAACACGGTGattcttcaaaaaaatttgatctagATGACGACAGTATTGAGTGTACAGACTATCAATTTCTCGAAGACGACGAAGCTCTAATGGTAACCGATAGTAATTTACGTGACGAAAAACCGTTTGGTTGTGGTTTATGCAACCTCCAAATGCTTAACGAGAATGAAATGCGAAACCACATTATTATTCATTCCACCAAATTATCATGCCCATTTGATGAATGTGGATGCGAGTATAACAGTTTCTCTAGATTAAGTTTACACATAATACATAGGCATTTGAACCGTGATGAATTTAAATGCATGCATTGTGGCGAATCATACAAGAGCTACGATGATTTACAGAATCACCTAAAAAAATCGTGTCCCGAGAGGAAATATAATTGTACTCATTGTGAAAAAAGTTTCTTTTCCATTAAAGCTTTGGGCATTCATATGAAAAGTTCGATTGAGAAAAAAGCAATTCTTTGTCAAATTTGTGGCAAATCATTTTCACATCAgggtgaattaaaaattcattctaGAACGCATACAGGAGAGCGTCCGTATCAATGTAACATATGTGGCAAAGCTTATAAAACTGCTAGTATGAGAACTGCTCATATGGATGCACATATCCAAGGAAAAACATTCCTCtgtaCAATTTgcgataaaaaattacaaactcGGACAAGTTTTCGTAATCATATGCGACGTCATACTGAAGATAAAAAGCATCAGTGCACAATTTGcttgaagaaattttttaccAAATACCATGTTAAACTGCATACGATGAAAATACATGATAATCCTAAgcgaattcaaaataaaaatgttagaacCCCAGTACCGAACAGTTtcttaattacataa
- Protein Sequence
- MELSSELELDIPNMCRVCLLQKEKLNNIFSNCIVEGYVIPLPEIIKSCLDLHLRKDDKNLPKNICSLCKIQVINFYSFKQKSKKVEEALKNLLSVSGLIKEEKETEDERHPANNSPIKMEVSSVLDEVAEYAEHEILDENDKIIEFSTVETIEPHEEFEYLNNDNIVKTITVNHDDDDNNETVELQQADVKCEELVEDEEEVREEEIDLGQNNEDSCELSNDDLKLASMNESPGIVDNLSNSCNICNKKFETINNLKRHLDTHNGIFFKCRICPKMYAHQASRNRHMRIRHSKQVKVFMSRRDNPFQRNDPLNPPIKLNSREDASTDLTSACTTESILNDKHSDAYEFQPLTELDDEQIYMDVYEYLCTICEANFKNEKLFVEHANYEHPDIFCSKCRKFFPSSADRNEHLLQEHTNESSNKKSSNIACRTFCRFCQKKLKSVIELNTHKELHETLNKWIESSVSPLIAFFTCYKCNTIFLNDQGLQGHNIAKHGDSSKKFDLDDDSIECTDYQFLEDDEALMVTDSNLRDEKPFGCGLCNLQMLNENEMRNHIIIHSTKLSCPFDECGCEYNSFSRLSLHIIHRHLNRDEFKCMHCGESYKSYDDLQNHLKKSCPERKYNCTHCEKSFFSIKALGIHMKSSIEKKAILCQICGKSFSHQGELKIHSRTHTGERPYQCNICGKAYKTASMRTAHMDAHIQGKTFLCTICDKKLQTRTSFRNHMRRHTEDKKHQCTICLKKFFTKYHVKLHTMKIHDNPKRIQNKNVRTPVPNSFLIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -