Tunc041704.1
Basic Information
- Insect
- Tipula unca
- Gene Symbol
- -
- Assembly
- GCA_951394425.1
- Location
- OX596382.1:168307600-168309074[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0071 1.1 11.3 2.8 1 23 104 127 104 127 0.96 2 11 7.2e-05 0.011 17.6 0.3 1 21 133 153 133 154 0.95 3 11 0.00099 0.15 14.0 2.9 2 23 162 183 161 183 0.95 4 11 0.0025 0.37 12.7 5.3 1 19 189 207 189 209 0.95 5 11 3.1e-05 0.0047 18.7 0.5 3 23 218 239 217 239 0.97 6 11 0.00084 0.13 14.2 0.1 2 23 264 286 263 286 0.95 7 11 0.0017 0.25 13.3 4.4 1 23 292 314 292 314 0.97 8 11 2.8e-06 0.00042 22.0 1.1 1 23 333 355 333 355 0.98 9 11 9.7e-06 0.0014 20.3 1.8 1 23 361 384 361 384 0.95 10 11 0.01 1.5 10.8 0.7 1 23 392 414 392 414 0.97 11 11 0.003 0.45 12.5 5.4 1 23 420 443 420 443 0.97
Sequence Information
- Coding Sequence
- ATGGTTTTGAATGATTCAACCAAAGATTGGCCATGTAcaaaatgtttggaaaatatCAAGGTCGCTATACAATTAAAGGaagataatattataaactcAGATATGATTGATTTGGTAATAAATACAATTGAAGGACCAGTAATATCAAACATCGAATCAAGCGATGATAAAGAATCTGTTAATACGGAATTGATGAGTTCTTTAGTAACTGCTGAACAATTCGAAGACAGGGATTCAGTAGCAGTGAAATCAAATGATGACGAGGACGAAGGAACAGTTGAGCAATCGTTCTTGATTAAAGGTGAAATGTATGAATGTGAGAAATGCGATGCAAAAACTCATACTTATAAACAATTATTGGATCATATGAGATTCCAGCATCCAGATATAAACCTATACGAATGTGAACGATGTGGTAAAGAATTTCGCTATCTTTCGCTGTACCGTAATCATGCCCGTGTTTACAAATTAGAGAAACCATGTATatgcaaaatttgtaaaaagggaTTTAAAGGTTTAAAGGATTTGAGGCAACATAATTTAACGCACAAAACCGAAAAAATACATCCATGTCCAtattgtgataaaatattttgccatAAAAAAGGTTTACACGCACATTCATTTTGTCACAAAGAGAAACGTATATTATGTCCTAAGTGCgacacaaaatttcaatataatagcCAGTTGAAAATGCATATGGCGATGGTCCATCGCCTAGGAATAATCAAACGTAAAGGTCAAAAagttcaattaaacaaaaagatTAAATTGCGGCAACAATCTACTTGCGAGATATGTGGAAAATTACTTGCTAGCGAGATTAGTTTGAAACGTCATATCAAACAAGTACATAAAGGAGAAAAGCCATTCCCATGTTCATATTGTAGTAAAACCTTTATATCATCTGTTGCTTTAAAATGCCATATGCAACAtcatattaattcaaaaaatagttCAATGGATCCTAAAACAATGGAatcattattgaaatataaatgtgATGAGTGTGACAAAGCGTTTACAAGTTCGCAATTTTTAAAGAATCACAAGATAATTCATTCTGGTTTGAAAGCACATATTTGTGCACATTGTGGAAAAGGgtttgcttttaaaaattatttagagcGCCACATACGTTTAGTCCACGACACGACCGATCCAAGGAATTTTATATGTGGTATATGTCGCAAAGTTTCGGCAAATGTATGGTGTTTTAATTCACACATGCTCTCGCATACTGGTGAAAATCCATTCcattgtaaattttgtgaatcCAAATTCAGATATGCAAAATCACTTCGAATACACATGAGAAACAAACATGAacccaaaaattaa
- Protein Sequence
- MVLNDSTKDWPCTKCLENIKVAIQLKEDNIINSDMIDLVINTIEGPVISNIESSDDKESVNTELMSSLVTAEQFEDRDSVAVKSNDDEDEGTVEQSFLIKGEMYECEKCDAKTHTYKQLLDHMRFQHPDINLYECERCGKEFRYLSLYRNHARVYKLEKPCICKICKKGFKGLKDLRQHNLTHKTEKIHPCPYCDKIFCHKKGLHAHSFCHKEKRILCPKCDTKFQYNSQLKMHMAMVHRLGIIKRKGQKVQLNKKIKLRQQSTCEICGKLLASEISLKRHIKQVHKGEKPFPCSYCSKTFISSVALKCHMQHHINSKNSSMDPKTMESLLKYKCDECDKAFTSSQFLKNHKIIHSGLKAHICAHCGKGFAFKNYLERHIRLVHDTTDPRNFICGICRKVSANVWCFNSHMLSHTGENPFHCKFCESKFRYAKSLRIHMRNKHEPKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -