Tunc025675.2
Basic Information
- Insect
- Tipula unca
- Gene Symbol
- -
- Assembly
- GCA_951394425.1
- Location
- OX596381.1:145837244-145838728[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0023 0.33 12.9 0.6 1 23 158 181 158 181 0.97 2 10 7e-05 0.01 17.6 2.7 1 23 184 206 184 206 0.99 3 10 2.1e-05 0.0031 19.3 0.3 3 23 214 234 213 234 0.99 4 10 9.6e-07 0.00014 23.5 1.6 1 23 240 262 240 262 0.98 5 10 0.00068 0.1 14.5 1.4 1 23 268 290 268 290 0.98 6 10 6.2e-05 0.0092 17.8 4.0 1 23 296 319 296 319 0.96 7 10 6.5e-05 0.0096 17.7 2.2 1 23 325 349 325 349 0.97 8 10 0.00059 0.088 14.7 0.5 1 23 368 390 368 390 0.98 9 10 7.6e-06 0.0011 20.7 0.2 1 23 404 427 404 427 0.97 10 10 4.1 6.1e+02 2.6 0.1 1 9 430 438 430 452 0.87
Sequence Information
- Coding Sequence
- atgaataataatcccagtttaattcataattatgataataaaattgatattagtACAGGTTTAGTGAGCAAATTAGGAGCTCGAGACGAATCTTATAATTTGGATGGCATATGCCGAATTTGCATGATTAACGATGCACACATGATTAATTTATGGTCATCGCCAACCGAAAATTTCGACGTGGAATTCCAGCACATAAAAGATGTTCTGGGGAGTTTTGCCTCTGTTCTgATAGACGAGAATGAAAATTTACCACATGGAATATGTGAAAAGTGCGAGGCAAACATCTACTTCACGTATACCTTTAAacgaaaatgtgaaaattcCGATGAAATTCTAAGAAACGCACTGAAACGCAAAGCTGAGGAGAAAGCGCGCTTTGAATCAATTGCCCAGAGTCTTGAACAAGAAGAAACGGGGGCAGAAGAACCCATCGATCTGATGAATATTGTGAATTCAATCGAAAACGCTTATCCATGTGACCAGTGCTCGGACTCATTTGAGCAACGTTTACAATTAAATCAACACTTAAAAAAGATTCACAAACGGTACAAGTGCAACGATTGTGGCGAACATTTTGCACAGCCCCAAATCCTTAGGCGAcaccataaaattcatttaggTATTAAAAACAAGCTGTGCTCCGTATGTGGCAGAGGTTTTCTACGATCGGACGATTTAAAACGGCACATCCGTGTCCACACGGGCGAGAAACCATTCAGATGTAATCAATGTCCGAAATCATATAAACAAAGTTCGGAACTAATTCAACATAAACTTACACACTCCGACGTTAAACACTTCACTTGCAAATTGTGCGACAAATCTATGTCAACCCGGAACGGATACTATATACACATGAAAGTTCATAACGGCCAAAAGAATCATGAGTGTCatttgtgtgataaaaaattcgTAACAAGCTCCGAACGAACATCACACATTCGGTACATCCATATGAaagagaaaatttttgaatgcaCGATGCCCGATTGCTCAAAACGATTTGTCACAAAAATCTGTTTAAATAAGCATCTCAAAATTCATGCGGAGAAAATGAAAAAGTTAGATGCAATATACAATCCGAATACGATAGCTGAATACGAATGTCCGATATGTACAAAACAGTTGCTAAGCCCGCAGACGCTCAAGAAGCATATGAAGTTGCATGAAACGGAAGATAATACGGGCACTCGGGTGGAAACCAAATTTGTATGcgaaatttgtgaaaaaaagTTTGCGGCCAAGTCAACGCTTACGAGGCATGTGGCGACGAGTCATACGTCTTTCACATGCGAGTTGTGTGGTACTACGATTTTAGATTACGCCGTTTTTGTCCTGCATAGGGAACTGCATAATAATGAGGACGATGTGTCCACGGACGAGAGTTCAAACGAGTAA
- Protein Sequence
- MNNNPSLIHNYDNKIDISTGLVSKLGARDESYNLDGICRICMINDAHMINLWSSPTENFDVEFQHIKDVLGSFASVLIDENENLPHGICEKCEANIYFTYTFKRKCENSDEILRNALKRKAEEKARFESIAQSLEQEETGAEEPIDLMNIVNSIENAYPCDQCSDSFEQRLQLNQHLKKIHKRYKCNDCGEHFAQPQILRRHHKIHLGIKNKLCSVCGRGFLRSDDLKRHIRVHTGEKPFRCNQCPKSYKQSSELIQHKLTHSDVKHFTCKLCDKSMSTRNGYYIHMKVHNGQKNHECHLCDKKFVTSSERTSHIRYIHMKEKIFECTMPDCSKRFVTKICLNKHLKIHAEKMKKLDAIYNPNTIAEYECPICTKQLLSPQTLKKHMKLHETEDNTGTRVETKFVCEICEKKFAAKSTLTRHVATSHTSFTCELCGTTILDYAVFVLHRELHNNEDDVSTDESSNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -