Tunc036438.1
Basic Information
- Insect
- Tipula unca
- Gene Symbol
- -
- Assembly
- GCA_951394425.1
- Location
- OX596382.1:86473856-86475441[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.046 6.9 8.8 1.0 3 23 213 234 211 234 0.97 2 10 5.8 8.6e+02 2.2 1.1 6 23 243 260 243 260 0.95 3 10 2.7e-06 0.0004 22.1 0.9 1 23 266 288 266 288 0.98 4 10 7.5e-07 0.00011 23.8 1.1 1 23 296 318 296 318 0.98 5 10 1.3e-05 0.002 19.9 1.1 2 23 325 347 324 347 0.95 6 10 0.0042 0.63 12.0 2.5 1 23 353 376 353 376 0.95 7 10 0.017 2.5 10.1 0.3 2 23 385 406 384 406 0.96 8 10 7e-07 0.0001 23.9 0.7 1 23 413 436 413 436 0.97 9 10 2e-06 0.00029 22.5 0.5 1 23 441 463 441 463 0.98 10 10 2.6e-06 0.00039 22.1 2.7 1 23 469 492 469 492 0.98
Sequence Information
- Coding Sequence
- ATGGCACTGGATTCATCATTATGTTGTTTATGTTTGAAAACATccgattttcttttaaatatattcgaAGAGCAAAGCGAAAATAAATGTCTCGCCTTGATAATATCTCAACACTTTTGGTTCGATATAAAAAAGGAGGAAAATATTAGTAAACGGGTTTGCGTTGAATGCTGGTCAAACGTCGATAACTttcactcattttacacacacGTCTATACGGTCCACAATGAATTCTATTCTAGAGTTCACGAAGAGATCAAACCGAAAATTGACGAAACAATCGCAACAGATGATCAACCTTTACCAGTTATTCTGGATCCAGAAATTTCACTTACAATTAAATCAGAGCGGGATGTGAGCATTGACGATACAACACAGTGTATCGAGAAAATAGAACCATCAACGGTGGAACTCGAAGAGTTGGAGGATGATGAAGTGTCTGAGGACAGTTTCAAAATGGACGATGCTCAAAACGAGGATAGTGCTAGCGATAGCAGTGGCTCAGATGCATCAGTGGTCCGACCAAAAACTAAATCACCAAGGAAGAAAAAACGGAAACCACGAGTAATCGATCCACTCCAACAAGCAAAAACTGAGGAGGAAAATAATCATATTCGCGAAAGATTTCCAATGGACTGCGAGttatgtaattttcattttgatacgTTTAATGATGCTCAAATTCATTATCGTACAGCtcataaaataaaaggatatctTCGGTGCTGCgacacaaaattcaaaactcGCCCAACTGTTGTGGAACATTTTCATCGTCATCTTAATCCAGACGAATTTAAATGTGATCAGTGTAATAAAACATTTGTTAGTAAACGTGGTCTAGCGGAACATATGGATAGGCATTTGTCTACCGAAGATAAACCATTCAAATGTACTGAATGCCCTAAAAGCTATATCCGCCGGTTTTTATTAGAGAGACACATGGAATCGCATAAGGATTTACCGAAATGTATTTGTGACGATTGTGGCAAAGCATACAGCAATAAACTAAATCTGAATATACATAAAAGGAACGTTCATGATCGTGCTTTTATCCATATTTGTGATGTGTGTGCCAAAGAATTCCGAAATAAAGTTGATTTTGATCAACACCACCGAAATGTGCATGAGACTGTACCCCAACCAAAAGTTCAATGTACTGTTTGTGGCGCTTGGCTGAAAACGAAACAATATCTTCGGCAACATATGGTTCGACATGAAGATGTTAAAGTAATGCATCCATGTGGTGAATGTGACAAATCGTTCCCATATCGCCGGGCTCTTCGGAATCATATTAGGACTGTGCAtcctaaaaaaatgtatgattgtAATTTGTGCGATAAACAATTTAAGAAGCCCGTAAGCTTGAAGGAACATATGGCTACGCATACTGGAGTTTCATTGTATCAATGTCCACACTGCCCGAAGACATTTAATTCGTCTGCCAATATGTACTCGCATAGAAAAAAAGTGCACAAGATCGAGCGGGAAGCGCAACTTAAATTAAAGGCTGCTGGATTGGcatag
- Protein Sequence
- MALDSSLCCLCLKTSDFLLNIFEEQSENKCLALIISQHFWFDIKKEENISKRVCVECWSNVDNFHSFYTHVYTVHNEFYSRVHEEIKPKIDETIATDDQPLPVILDPEISLTIKSERDVSIDDTTQCIEKIEPSTVELEELEDDEVSEDSFKMDDAQNEDSASDSSGSDASVVRPKTKSPRKKKRKPRVIDPLQQAKTEEENNHIRERFPMDCELCNFHFDTFNDAQIHYRTAHKIKGYLRCCDTKFKTRPTVVEHFHRHLNPDEFKCDQCNKTFVSKRGLAEHMDRHLSTEDKPFKCTECPKSYIRRFLLERHMESHKDLPKCICDDCGKAYSNKLNLNIHKRNVHDRAFIHICDVCAKEFRNKVDFDQHHRNVHETVPQPKVQCTVCGAWLKTKQYLRQHMVRHEDVKVMHPCGECDKSFPYRRALRNHIRTVHPKKMYDCNLCDKQFKKPVSLKEHMATHTGVSLYQCPHCPKTFNSSANMYSHRKKVHKIEREAQLKLKAAGLA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01456729;
- 90% Identity
- iTF_01460545; iTF_01456729;
- 80% Identity
- -