Tunc009515.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tipula unca
Gene Symbol
-
Assembly
GCA_951394425.1
Location
OX596380.1:128052057-128078720[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 2.8e-05 0.0041 18.9 2.0 1 23 594 616 594 616 0.99
2 11 0.00068 0.1 14.5 3.5 3 23 624 645 622 645 0.95
3 11 0.00021 0.031 16.2 1.9 1 23 651 673 651 673 0.98
4 11 1.9e-05 0.0028 19.4 0.3 1 23 679 701 679 701 0.98
5 11 0.0002 0.03 16.2 0.1 1 23 707 729 707 729 0.99
6 11 7.7e-07 0.00011 23.8 0.5 1 20 735 754 735 755 0.97
7 11 0.0044 0.65 12.0 3.3 2 23 765 784 764 784 0.97
8 11 3.3e-05 0.005 18.6 1.1 3 23 792 812 791 812 0.99
9 11 4.3e-05 0.0065 18.3 1.1 1 23 818 840 818 840 0.99
10 11 0.011 1.6 10.7 0.4 1 23 846 873 846 873 0.94
11 11 0.015 2.3 10.3 0.2 1 20 879 898 879 900 0.92

Sequence Information

Coding Sequence
atggaAAATCGAATTGGGATCATTGGGAATTTGGAATGTGATTTGATGCAATTACTCCTTAACGGAATAAATTCGAATCGAAATTTGGAACGCGTTATGTTTAAGAATAACATTGTTTGGATGCTATATAACTTCGATGCTGAATCCAATACGGccgattattataaaatacggTTTGAATATGTATACCTATTGTTATCCAGTGACGTTGTGGTGGTATCTGTTTTGGAAGATAGCCGAACGTTTGGAATTTATGACTTGTATAAAATTAGTCGCGATACTGATGTGATTATAACCAAAATTGCTGATAATTTTACTGGAGGTGATGGGGACGATGAGTGTGAATATATGCTATTTGTCTTTGTAAAATTTGGTACCATAGCAACAAGGAGAGCTAATCTGAAAGGAAGTTATTTAGATAGTGCGATTGTTatagCTTTTCCACAACTGTTCACTCGTCTTGACGATCTGAGCCATCGACACATTGATACATTTGCCCGTAGCAATTATCCCACCATTGTTGCGCTCACTGAAGATTTAAATTTCCGTCTTAACCTACGTCAGACCGACAATTTTGGTTGGTATCGTAATGGATCGTTTGATGGTTTAATGCAACTTTTtgaaaaagaagaaattgaatttggtGCTGTTGGCATATTAATGCGCGACGAACGAATACCAATTGTTGATTGGTCGGCTGAAACACACACAATTCGTGCGTGTATTATTTTTCGACAACCACCATTATCTGCAGTCTCCAACATATTTATATTGCCATTCAATTTAGACGTGTGGATCGGAAGTAGCAGtttatttttgcttatttttatttttgtcctgTTCCAGTGGCTAATTCCAAATACAAGGCAACTACTACACCCATTTGATTCGGTAACATTCGTTATTGGTGCAATTTGTCAACAAGGATTTCACCAAACATTAAGTACAATATCTGgacgtattttaatatttttaacatttgttaCGTCCCTATTTCTATTTACATCATATTCAGCGAATATTGTTGCATTGCTTCAAAGTCCCAGTAATGCAATCAAATCAATTccagatttaattaattcaccaCTAAAAGTAGTCGTGCAGGACACTGTTTACAATCACATATATTTCGGTGAAACTAGTAATATAGTAATTAAAgatttatacaacaaaaaaattaaattgaacggGAACCATTCTTTTATCGGCATTTATAATGGAGTTGAGAAAATTCGTACTGGTATTTATGCATATCAGGTAGAGGCACATGCTGCATACCAAGTCATAAGTGATACATATGGAGAGCATGAGAAATGTGGTTTAAAAGAATTGGAAACGTTTAAATTGCCACATGTAACAATACCTTTGAAAAAGCATAGTGGATATACGGAGCTATTCAAGCAAAGATTGACATGGCAACGTGAGGTTGGTTTAATAAAGCGTGAATATAAACGATGGATACCTCAAAAGCCGCATTGTCAAAGTAATGTCGGTGGTTTTGTATCGGTTGGATTGACCGAAAGTCGTGCACCATTGATAATTTTGGGAATTGGAATCATAGTCGCTTCATTAGTTTGTGTCATCGAGATTTTGGTGTACCGTTTTAAACAGCGGAGCAAAAATAATTGTGGGAAAGCCGTAGAAAAGGAAAtcgatgaaaatgaaaatgaaacaaaCGATTTAGTGGATAGTACTACCACCATCGTACCTGGTGACAATGTGgatgaaaattcattaaaaaaacggCGGGCTAAACGAAAACCGCGTGTCAAAAAAGTCTACCAGTGTGATGTATGTCACAAAGTATTTCAGGGATTAAATGATTTGCGGAAACATTATCGCATACACAGTGATGAGCGGCCGTATGGATGTGATCattgtagtaaaaaatttcgACAAGCAGGttgtttaaaaaatcatatagcCTCTCAGCATGGTAccgataccaaatttatatGTCATTTTTGTGACAAATCGTTTCCGATCAAGGAAAGACTTCGTCTACATTTGCGAATTCATTCAGGCGAGAAACCCTATAAATGCGCATATTGTCAAAAAACGTTTGCACGGGGCGGTCAATTAACACAGCATTTGGCCATACATAATGGGTATAAAAAGTATCGATGTGATTTTTGTACAGCAGCTTTTGCGTTTGCGGCCAATTTGAAGttacatattaaaatacatacgaATGAGAGGGATTACACGTGCCATGTTTGTGGGAAGACATTCGTCCGCTCCGATGCGCTTCGAAAACACTTGGATTGTATTCAcgccaatttaaaaacaaaacgctGTGATATTTGTAACAAAGATTTTAAAGGACATTTGTTGCAGCACATGCGAACGCATAAAAATGTACGACCACATGGTTGCGCTGTATGCCATGCGAAATTTTCTCAACGTTCTCAGTTAATTGTCCATCAACGAACACATTCGGGAGAACGACCGTATCGATGCCAAGTTTGCTGGCAGGCTTTTGCGCATTCGAGCGTCCTAAAGCTACACATACGTAAACATACGGGCGAAAAACCGTTCAAGTGTGAATTGTGTCCGTCAGAAAATGAAACCGCATTTTCTCAACTACCTCATCTTAAAAAGCATATGTCGGCAATTCATGGTTTGGATAAGACCTATTTGTGTACAGAATGTGGGCAGTATTTCAAAACGAAATTGGAGTATGCTGTGCATCAAACGGAATGCTTAAAACGTAGTCGAGAAAATCATCCGGATGATGTGGATGGAGTGATCAACGGTATGATGCAAAATAATGGGTCAGTTGGTTCTGCTGAAGAgAACAATGACGAAACAGACGAAAAGGTACCAAAACCGAAACGCGAATAtattaaaaacgattttgattATCCACCAACACCGATGGCGGTCACCAGAATGAGATTACTTGTTGCAATATTATTGCGACGCATTTCATCGGAAGACCGACTTAAACAGTTAGGTTACGAGAAACGATTAATCGATAATGTTTTGGTCGATTCATTAAAATTAGCCGATCGCAACGTGTGCGATGACATGTCATTAACAGAAGCGGAAcgattaaaaatcaacattagAGAATGGTTAGAGTGGTTGGTACCGTCGGATTATATGCAAAAATTTCAATCGGAGCAACGAAGTACCGAAGAATTACTTGAACAATTAACGCGAATTTAG
Protein Sequence
MENRIGIIGNLECDLMQLLLNGINSNRNLERVMFKNNIVWMLYNFDAESNTADYYKIRFEYVYLLLSSDVVVVSVLEDSRTFGIYDLYKISRDTDVIITKIADNFTGGDGDDECEYMLFVFVKFGTIATRRANLKGSYLDSAIVIAFPQLFTRLDDLSHRHIDTFARSNYPTIVALTEDLNFRLNLRQTDNFGWYRNGSFDGLMQLFEKEEIEFGAVGILMRDERIPIVDWSAETHTIRACIIFRQPPLSAVSNIFILPFNLDVWIGSSSLFLLIFIFVLFQWLIPNTRQLLHPFDSVTFVIGAICQQGFHQTLSTISGRILIFLTFVTSLFLFTSYSANIVALLQSPSNAIKSIPDLINSPLKVVVQDTVYNHIYFGETSNIVIKDLYNKKIKLNGNHSFIGIYNGVEKIRTGIYAYQVEAHAAYQVISDTYGEHEKCGLKELETFKLPHVTIPLKKHSGYTELFKQRLTWQREVGLIKREYKRWIPQKPHCQSNVGGFVSVGLTESRAPLIILGIGIIVASLVCVIEILVYRFKQRSKNNCGKAVEKEIDENENETNDLVDSTTTIVPGDNVDENSLKKRRAKRKPRVKKVYQCDVCHKVFQGLNDLRKHYRIHSDERPYGCDHCSKKFRQAGCLKNHIASQHGTDTKFICHFCDKSFPIKERLRLHLRIHSGEKPYKCAYCQKTFARGGQLTQHLAIHNGYKKYRCDFCTAAFAFAANLKLHIKIHTNERDYTCHVCGKTFVRSDALRKHLDCIHANLKTKRCDICNKDFKGHLLQHMRTHKNVRPHGCAVCHAKFSQRSQLIVHQRTHSGERPYRCQVCWQAFAHSSVLKLHIRKHTGEKPFKCELCPSENETAFSQLPHLKKHMSAIHGLDKTYLCTECGQYFKTKLEYAVHQTECLKRSRENHPDDVDGVINGMMQNNGSVGSAEENNDETDEKVPKPKREYIKNDFDYPPTPMAVTRMRLLVAILLRRISSEDRLKQLGYEKRLIDNVLVDSLKLADRNVCDDMSLTEAERLKINIREWLEWLVPSDYMQKFQSEQRSTEELLEQLTRI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-