Basic Information

Insect: Tipula unca
Gene Symbol: -
Assembly: GCA_951394425.1
Location: OX596382.1:2721922-2723179[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.016 2.4 10.2 0.4 3 23 52 72 50 72 0.92

2 10 1.6e-06 0.00023 22.8 1.0 1 23 78 100 78 100 0.98

3 10 5.6e-05 0.0084 17.9 0.2 1 23 106 129 106 129 0.95

4 10 0.034 5.1 9.2 7.4 1 23 135 157 135 157 0.99

5 10 1e-06 0.00015 23.4 0.2 1 23 163 185 163 185 0.99

6 10 1.4e-07 2.1e-05 26.1 0.3 1 23 191 213 191 213 0.98

7 10 6.2e-07 9.2e-05 24.1 0.7 1 23 219 241 219 241 0.96

8 10 0.011 1.6 10.8 6.3 1 23 247 269 247 269 0.97

9 10 2.5e-05 0.0037 19.0 0.9 1 23 275 297 275 297 0.99

10 10 0.025 3.6 9.6 0.2 3 22 305 324 303 324 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.016	2.4	10.2	0.4	3	23	52	72	50	72	0.92
2	10	1.6e-06	0.00023	22.8	1.0	1	23	78	100	78	100	0.98
3	10	5.6e-05	0.0084	17.9	0.2	1	23	106	129	106	129	0.95
4	10	0.034	5.1	9.2	7.4	1	23	135	157	135	157	0.99
5	10	1e-06	0.00015	23.4	0.2	1	23	163	185	163	185	0.99
6	10	1.4e-07	2.1e-05	26.1	0.3	1	23	191	213	191	213	0.98
7	10	6.2e-07	9.2e-05	24.1	0.7	1	23	219	241	219	241	0.96
8	10	0.011	1.6	10.8	6.3	1	23	247	269	247	269	0.97
9	10	2.5e-05	0.0037	19.0	0.9	1	23	275	297	275	297	0.99
10	10	0.025	3.6	9.6	0.2	3	22	305	324	303	324	0.90

Sequence Information

Coding Sequence: atgttaggtAAGAACGTAGCTTCACAAGACAAATACACAGTATATCACAAAGACAAGTTTTTACCAACCTGCCACTTTGCGCTGCAGGATATTGCCAACACAGAAGTTAAAACTGACGATAAGAAGTCTCCAATGTACGATAAGAATAAAACTTGTATTGAGTGTGGTAAACTATTTAGCAACGTGCACGTACTTAAAGCTCACTTAGCGATTCATTCAAATGAACGGCCATTCAAATGCGCCACATGTGCAAAAGGGTTTAAGGATAAAAGTAGTTTAAGAAAACATTTAATGATTCACACCGACAACAAACCATACCCGTGTACGGAATGCGATATGAAATTTAATGAACCGAGCCGTTTAAAAAATCACATATTCATCGCTCATTCACCTGTAAACCCGTATAAATGTAGCTTGTGTTCAAAAGACTTGCATAATAAACATAGTTTTATATATCACATGAAAAAACATGCCGGTGACTTGGAATTCAAATGTCCTGATTGTCCAATAGCGTATGCGAAACGCTATCAACTGAAAGTCCATTTACGATCACACACAGGCGAGAAACCGTACCCGTGTAATGTGTGTCCTAAACAATTTACAACCAAAAGCTTATTAAATGTTCATTTAAATGTGCATAATAAAGACAAACGATACAAATGCGATCAATGTGATAAAGATTATAGTAGAAAAGATGATTTAAAACGGCATGTTGTGATACATACTGGTGACCTACCGTACATGTGCCATCTGTGCTCAAAACGATTTCGTGTCAAAAGTAAATTTGATTTACATTTATTACATCATGCTAATGCTCGAGAATACAAATGTTCCTATTGTCCATCAGCATTTAATACCAAAGAAGTTCTGAAGGTACACTTAAAACGGCATGAACAAGGAAAATTGGTCAAATGTATTAACTGTTCACAAATCTTTGGTCGGCGCATGGATTTAAAAGTACACATGAAAACGTGCTTAAAAAATGTTAGTCTTGTTGCTGAGGATGCATTAtctaaaaactga
Protein Sequence: MLGKNVASQDKYTVYHKDKFLPTCHFALQDIANTEVKTDDKKSPMYDKNKTCIECGKLFSNVHVLKAHLAIHSNERPFKCATCAKGFKDKSSLRKHLMIHTDNKPYPCTECDMKFNEPSRLKNHIFIAHSPVNPYKCSLCSKDLHNKHSFIYHMKKHAGDLEFKCPDCPIAYAKRYQLKVHLRSHTGEKPYPCNVCPKQFTTKSLLNVHLNVHNKDKRYKCDQCDKDYSRKDDLKRHVVIHTGDLPYMCHLCSKRFRVKSKFDLHLLHHANAREYKCSYCPSAFNTKEVLKVHLKRHEQGKLVKCINCSQIFGRRMDLKVHMKTCLKNVSLVAEDALSKN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -