Tunc010753.1
Basic Information
- Insect
- Tipula unca
- Gene Symbol
- -
- Assembly
- GCA_951394425.1
- Location
- OX596380.1:147029642-147034685[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.001 0.15 14.0 1.5 2 23 151 172 150 172 0.97 2 17 0.55 81 5.4 0.7 5 23 175 193 174 193 0.83 3 17 0.004 0.59 12.1 4.5 1 23 199 221 199 221 0.97 4 17 2.3e-06 0.00034 22.3 1.9 1 23 227 249 227 249 0.98 5 17 0.003 0.44 12.5 3.7 2 23 258 279 257 279 0.97 6 17 9.3e-05 0.014 17.2 1.1 1 23 285 307 285 307 0.98 7 17 6.1e-08 9e-06 27.3 0.4 1 23 313 335 313 335 0.99 8 17 0.037 5.5 9.1 0.5 1 13 341 353 341 355 0.89 9 17 0.00061 0.09 14.7 1.1 2 23 493 514 492 514 0.96 10 17 0.081 12 8.0 2.3 5 23 517 535 516 535 0.95 11 17 0.25 37 6.5 5.0 1 23 541 563 541 563 0.96 12 17 1.9e-05 0.0028 19.4 4.8 1 23 569 591 569 591 0.98 13 17 0.00053 0.079 14.9 0.2 2 23 600 621 599 621 0.97 14 17 0.0056 0.83 11.7 0.5 5 23 631 649 629 649 0.95 15 17 2.7e-05 0.004 18.9 2.3 1 23 655 677 655 677 0.99 16 17 0.79 1.2e+02 4.9 7.3 1 23 683 705 683 705 0.91 17 17 0.00012 0.018 16.9 3.3 1 23 711 734 711 734 0.96
Sequence Information
- Coding Sequence
- ATGACAGTCTAcacattaaaccaaaaaattttcataGTAAAACGTTATTATCAATCAGGCAATTCAACAGACAAAGTTCAAACTGAGTTTCCTACCAAATTTTTCTCTAAAGAATCGCCAACATgtgaaaatattatagaattaatcaatttatttgaagaaTATGGCAATGTTTGTGAATGCGGATGCAGAAAGAAAGAGATCCCTGATTTAAACTATGCGaattctgAATCATATATATTCGCAATTAAAAGGGAAGAATTGAATATTGTTGATGAATTAAAGATAGAAGATATTGATGAAGTTCAAGCATATAATGACTTATCAGCCTCTCAAGACGACGATTCCGAAGAAGACAGCACATATGAACAGAGTAGCGAGGCCGAACGTAATGACGATTCCGAAAaggaaatttcaattaaaaaaaaacgaaatgtaCGCCAAGATTTAAAATGCAAACAATGTGACCGCCAGTTTATGCGAGCTGATCGATTCCGTGCCCATTTGGAAAAACACGACAAGGAATGCAAAATATGTGGTAAACGACCTCGTAATATTGACCAACACATGCGGTACCACACAGGCGAGAAAGGGTTTGTTTGCTATGTATGCGGTCTGCAATGTTTCAAATCTGACCAATTACATTCTCATATGCGATCACACCAACAAGAACGACCCTTTACTTGCGCTACATGCAATAAGGGCTTTAAATCTAAAAACGATCTAAACCGACATGTTAAAACTCATATCCCCTTCGATAAGCGTCCGATCCAGTGTGATGTGTGTCAAAAGCGATTTTGTTTCAGACGagaatataatgtacataaaaaaattcacacgGGGGAAAAGACGTACTTTTGCAAACAGTGTGAATTAGGATTTACCACTAATTGGTCACTAAAAATGCATGCACGGACTCATACTGGTGAAAAACCCTTTAAATGTGATTATTGTGATAAGGCATTCAGTCGGTCAGGTAGTTTAAACATTCACGTTCGAATACATACGGGAGAAAAACCATACAGTTGCCAGATTTGcaataaaactttttatgaTGCTGGTTCTCGAGGTAAAGGAAACTCAACAGGAGATGTGCAAAAAGAATTTCCAGATGAATTTAGTGAATTCCAAGGCACACTAAGTGATAGCAGCATTATTGAAATAGTTAATATATTCGAGAAGTATGGAAATGTTATGTTTAGTTACGAAACAAGTGAAATAGAAAATGATTTgATTCAGCAAGAGATTGAAATACCGATTAATAGCGTTGATGCTGAAATAGAGTCGTTTGAATTGGAACTTGTTAAACCAGAAACAACGACTATTGATAAGTTATATGAGGATGACCAGGATATTAACGAAATAAAAGGCGATAATGAAAAAGGCGGTAGTTCTGAAGAATATGGTAAACATTCAACGGATAAAATTCAGAACGCTGAATCGAAAAAATTTAGTTCTAAAGTTAAACTATTGTTAAAATGCGAAATATGTGATATAACATTTAATCGTCATGCCCGTTACGATCGTCATATGAATGCCCATAAAAATACATGCCAAGTATGTTGTAAACGTGTCCGAGATTTAAAAGTTCATATTCGACGACATACGGGTGAGAAATCTTATCAGTGTTCACAATGTGGCATACAATTTCACCGATACGATCGTTTACGTTGCCACATGGTTTCACATTCCGATGAGCGGCCATTCCCTTGTAAAACTTGTAATAAATCGTATAAAACTAGGAAACATTTGCAAGAACATGCAAAGACACATTTGCCTGCAGAAGAACGACCTATTAAGTGTGAAGTGTGTGGAAAAGGGTTTTTATATAATGTCGATTTGAAAAAACATAGCCGAATACATACGGGTGAAAAACCTTCGTTGTGTATAGTTTGCGGTAAAAGTTTTGCATCAAATACGATATTAAAAGTACATAAGAGGACACATACGGGTGAAAGACCATATCAATGTCTATACTGTGATGAAAAATTCAGCCGGTTTGGCTCATTTCAAACGCACACACGAATTCATACCGGAGAAAAACCTTACAAATGTAACTATTGTGAAAAGACATTTCACGTTTCTGGATCTTGTCGTTCTCATGAACACATCCACATCGGTGATTTTCCGTATAAATGTTTACTATGTAATAAAGCTTATAATCATTTGAGTAGTCTTAAATCTCATATGAGTTATACTCACGGAGATgcacaaaatttgtaa
- Protein Sequence
- MTVYTLNQKIFIVKRYYQSGNSTDKVQTEFPTKFFSKESPTCENIIELINLFEEYGNVCECGCRKKEIPDLNYANSESYIFAIKREELNIVDELKIEDIDEVQAYNDLSASQDDDSEEDSTYEQSSEAERNDDSEKEISIKKKRNVRQDLKCKQCDRQFMRADRFRAHLEKHDKECKICGKRPRNIDQHMRYHTGEKGFVCYVCGLQCFKSDQLHSHMRSHQQERPFTCATCNKGFKSKNDLNRHVKTHIPFDKRPIQCDVCQKRFCFRREYNVHKKIHTGEKTYFCKQCELGFTTNWSLKMHARTHTGEKPFKCDYCDKAFSRSGSLNIHVRIHTGEKPYSCQICNKTFYDAGSRGKGNSTGDVQKEFPDEFSEFQGTLSDSSIIEIVNIFEKYGNVMFSYETSEIENDLIQQEIEIPINSVDAEIESFELELVKPETTTIDKLYEDDQDINEIKGDNEKGGSSEEYGKHSTDKIQNAESKKFSSKVKLLLKCEICDITFNRHARYDRHMNAHKNTCQVCCKRVRDLKVHIRRHTGEKSYQCSQCGIQFHRYDRLRCHMVSHSDERPFPCKTCNKSYKTRKHLQEHAKTHLPAEERPIKCEVCGKGFLYNVDLKKHSRIHTGEKPSLCIVCGKSFASNTILKVHKRTHTGERPYQCLYCDEKFSRFGSFQTHTRIHTGEKPYKCNYCEKTFHVSGSCRSHEHIHIGDFPYKCLLCNKAYNHLSSLKSHMSYTHGDAQNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -