Basic Information

Insect: Tipula unca
Gene Symbol: -
Assembly: GCA_951394425.1
Location: OX596381.1:123555381-123558157[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00085 0.13 14.2 2.4 2 23 152 173 152 173 0.98

2 11 0.00042 0.062 15.2 2.6 1 21 179 199 179 201 0.95

3 11 5.6e-07 8.3e-05 24.2 0.7 1 23 207 229 207 229 0.98

4 11 0.036 5.3 9.1 4.4 1 20 235 254 235 255 0.97

5 11 0.0002 0.03 16.2 5.3 2 23 400 421 399 421 0.97

6 11 5.3e-05 0.0079 18.0 2.7 1 21 427 447 427 449 0.95

7 11 1.6e-06 0.00024 22.8 0.5 1 23 455 477 455 477 0.98

8 11 3e-05 0.0045 18.8 4.3 1 23 483 505 483 505 0.96

9 11 2.5e-05 0.0037 19.1 0.6 1 23 511 534 511 534 0.97

10 11 4.8e-09 7.1e-07 30.7 0.7 1 23 540 562 540 562 0.99

11 11 2.4e-05 0.0036 19.1 0.9 1 23 568 590 568 590 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00085	0.13	14.2	2.4	2	23	152	173	152	173	0.98
2	11	0.00042	0.062	15.2	2.6	1	21	179	199	179	201	0.95
3	11	5.6e-07	8.3e-05	24.2	0.7	1	23	207	229	207	229	0.98
4	11	0.036	5.3	9.1	4.4	1	20	235	254	235	255	0.97
5	11	0.0002	0.03	16.2	5.3	2	23	400	421	399	421	0.97
6	11	5.3e-05	0.0079	18.0	2.7	1	21	427	447	427	449	0.95
7	11	1.6e-06	0.00024	22.8	0.5	1	23	455	477	455	477	0.98
8	11	3e-05	0.0045	18.8	4.3	1	23	483	505	483	505	0.96
9	11	2.5e-05	0.0037	19.1	0.6	1	23	511	534	511	534	0.97
10	11	4.8e-09	7.1e-07	30.7	0.7	1	23	540	562	540	562	0.99
11	11	2.4e-05	0.0036	19.1	0.9	1	23	568	590	568	590	0.98

Sequence Information

Coding Sequence: atgaaacatatttcaaaagatttatgtaggatttgtttaaataatccTGGTGCTATATCATTATATGATAAAGgcgaaaaaataacaataattgatGCAATATTTTCTGTTACCAAcgtacaaattttatacaatgaaacttatccaaatgcgatttgtATAAGCTGCTTGGAACGTATAAAATTGGCAGTAAAATTGCGTGAAGATGTCGAAAATTCagaagaaatattaaaacaaatccaAACTACTAGTAAACAAACTATTATTACTGATTTTAAAGTTGAAACAGATGAGGAAAATGATACTGTTGATTTAAAAGATAACCTAGAGGATTCAGAAAGTGTTTCAGAATTGGAAGAAGaagattcaaataaaaaacctgTTAGAGGGCAAACAAATAAGCATTTGAGTTTAACCAATGGAAAGATATCACAGAAGAAGGAATATCCAAGAAAATGTCATATATGCGGCAAGGAATTTAGACTTCATgctattttgataaaacatttGAGAGTGCATACAGGTGAAAAACCATATGAATGTGATATATGCTTCAGAAATTTTTCCCAAAGTGGAAATCTACTGGTTCACAAAAGGTGTCATACAAAAGAAAAACCGTATATATGTGAAGTGTGTAGCAAACAATTTTCGCAGAGTGGCAGTCTCAAACAACATATGCTAACACATGAGTCATCACGAAATTTCAAATGTGATCAATGTTTCAAAGATTTCCGATGTAAGAAGACATTGCAACGACATATGgTGGATTTTAATGAATGTATTCCTAATTCTATTTGTCAAAAATGTATGGAAAAAGTCTATGTAGCAAATAAACTTAAAGGTGATATTGTAGCTTCGGAACTCAAACTAAAAGAAGTGTTTTCTGAATTTCGATTAagttttattgaaaCGGCACAAGTTGTAAAAGAAATAGATATTAAGGTTGAAGAAGGTTTCACCTGTAATGATACTGCCTTTAACAATGATGATGAATCAGAATATaccaatgatgatgatgatgaggatgACACTGAACCTCTagtgaaattcattaaaaaaacaaaaaaatataaaccaagGTCAAGAGCAAACAGAAGCATTGACGACCTTGGTGATTCCCAGTCAGATAGGAAGGACTCAGACAATGATGAACATAATCAAAAGAGGACTAGAAAACGATACGCAAATAAAGAAACTAAATGTCAGGAATGTGGAAAGCAATTCTCTTGTCATTCGAACCTATTAAGCCATATGAGAATACATACCGGGGAGAAGCCTTATGAGTGCGATATATGTCAGAAACGTTATTCACAAAGTAGTAATCTTGTGATTCATAAAAGATGCCATACAAATGAGAAACCATTTATTTGTGAAGTGTGCAGTAAACAATTTTCACAAATGGGTAATCTTCAACAGCATATGTTAACGCATACCTTAACCGAGACCTTTAAATGTGAACAATGTTTTAAAGAATTTCGTAACAAATCTTCTTTTAAACGACATATTTTCGAGCATTCTGGCATTAAAAATCATGTTTGTGGAACATGTGGAAAATCATTTTTACGCGCAAATGCTTTAAAGTCTCACATACGAACTGTTCACCTAAAAGACAAACGATACAAATGCTCAGAATGTGGGAAAGCGTTTTCAAATTCAAGCAATTTGCAAGCACATTTTCGTATTCACACTGGCGAAAAAccatttgaatgtaaattttgtgATGCGAAATTTAATCAATCGAGTCCATTAGTAAGACATATGCAACAACATCTTGCTAATAATGTAAAACTATCAAAAGAAGATGAACTTGAACAGCAATATAAAACGGAAGGAATTGATAATTATAttgcattaaattttaactaa
Protein Sequence: MKHISKDLCRICLNNPGAISLYDKGEKITIIDAIFSVTNVQILYNETYPNAICISCLERIKLAVKLREDVENSEEILKQIQTTSKQTIITDFKVETDEENDTVDLKDNLEDSESVSELEEEDSNKKPVRGQTNKHLSLTNGKISQKKEYPRKCHICGKEFRLHAILIKHLRVHTGEKPYECDICFRNFSQSGNLLVHKRCHTKEKPYICEVCSKQFSQSGSLKQHMLTHESSRNFKCDQCFKDFRCKKTLQRHMVDFNECIPNSICQKCMEKVYVANKLKGDIVASELKLKEVFSEFRLSFIETAQVVKEIDIKVEEGFTCNDTAFNNDDESEYTNDDDDEDDTEPLVKFIKKTKKYKPRSRANRSIDDLGDSQSDRKDSDNDEHNQKRTRKRYANKETKCQECGKQFSCHSNLLSHMRIHTGEKPYECDICQKRYSQSSNLVIHKRCHTNEKPFICEVCSKQFSQMGNLQQHMLTHTLTETFKCEQCFKEFRNKSSFKRHIFEHSGIKNHVCGTCGKSFLRANALKSHIRTVHLKDKRYKCSECGKAFSNSSNLQAHFRIHTGEKPFECKFCDAKFNQSSPLVRHMQQHLANNVKLSKEDELEQQYKTEGIDNYIALNFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -