Basic Information

Insect: Tipula unca
Gene Symbol: -
Assembly: GCA_951394425.1
Location: OX596380.1:3933463-3935491[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.26 39 6.4 0.4 6 21 175 190 173 191 0.91

2 15 0.016 2.4 10.2 1.0 2 21 200 219 199 222 0.94

3 15 2.6e-05 0.0038 19.0 0.5 1 23 229 251 229 251 0.96

4 15 0.11 16 7.6 3.2 1 23 257 280 257 280 0.95

5 15 0.029 4.3 9.4 5.4 1 23 285 307 285 307 0.98

6 15 0.00043 0.064 15.2 6.4 1 23 313 335 313 335 0.99

7 15 2.5e-06 0.00037 22.2 2.8 1 23 341 363 341 363 0.96

8 15 1.4e-05 0.0021 19.8 1.4 1 23 369 391 369 391 0.98

9 15 4.2e-08 6.3e-06 27.8 3.5 1 23 397 419 397 419 0.99

10 15 0.00011 0.016 17.0 0.6 1 23 425 448 425 448 0.92

11 15 0.00011 0.016 17.0 0.7 1 23 507 529 507 529 0.99

12 15 4.2e-06 0.00062 21.5 1.1 1 23 535 558 535 558 0.95

13 15 3e-05 0.0044 18.8 0.1 1 23 564 586 564 586 0.97

14 15 7.5e-06 0.0011 20.7 3.7 1 23 592 614 592 614 0.97

15 15 0.00078 0.12 14.3 0.1 1 23 620 642 620 642 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.26	39	6.4	0.4	6	21	175	190	173	191	0.91
2	15	0.016	2.4	10.2	1.0	2	21	200	219	199	222	0.94
3	15	2.6e-05	0.0038	19.0	0.5	1	23	229	251	229	251	0.96
4	15	0.11	16	7.6	3.2	1	23	257	280	257	280	0.95
5	15	0.029	4.3	9.4	5.4	1	23	285	307	285	307	0.98
6	15	0.00043	0.064	15.2	6.4	1	23	313	335	313	335	0.99
7	15	2.5e-06	0.00037	22.2	2.8	1	23	341	363	341	363	0.96
8	15	1.4e-05	0.0021	19.8	1.4	1	23	369	391	369	391	0.98
9	15	4.2e-08	6.3e-06	27.8	3.5	1	23	397	419	397	419	0.99
10	15	0.00011	0.016	17.0	0.6	1	23	425	448	425	448	0.92
11	15	0.00011	0.016	17.0	0.7	1	23	507	529	507	529	0.99
12	15	4.2e-06	0.00062	21.5	1.1	1	23	535	558	535	558	0.95
13	15	3e-05	0.0044	18.8	0.1	1	23	564	586	564	586	0.97
14	15	7.5e-06	0.0011	20.7	3.7	1	23	592	614	592	614	0.97
15	15	0.00078	0.12	14.3	0.1	1	23	620	642	620	642	0.97

Sequence Information

Coding Sequence: ATGGCATTTAATTACAGCAAAACTTGTCGAACTTGTTTAAAACAAGAAAAGGAAgttattagtttaaatttaatatttggtgaTATAACGCTTATTGATATTCCCGATGAATTATCAATAATGAGACTAAAGATATCTAAAAACGATGGTCTTCCGCAATCCATATGCAATGAATGTGTTGATTCCTTAaagtatgtaaataaatttcggAAATTATGTGAGAAATCACAATTAACACTAGAATGGTTTCATAAATCCAAATACAATATAAAcgaacaaattatttcaattaaaataacgaCACAAAATGAGTTAGAATTTGCTGAAGATGAATTTTTGCACAATGAACCAAATGAGCTTTCATCGGAACAGAAATTGGAAATCCAGTTAAAAGAGAAAATTCTACCGAATGAGGGGCTTACGCGCTCCGGTGATGAATGGAATCAAAATGATTTAGTCGAATCTGATTCACACTCAgacgaaattcaaaataataacagtATAAATCATATTTACTTCAGATGTGGTAAATTTTGTTCGAACAATGAAGAATTAATATATCACAAGAATAATATTTGTGAGACTAGATCAAATCTACAGTGTCGTTACTGTAAAGAGATTTTCGTTACACTCGATTTGCTAGATACTCATATAAAATGTGTTCATCCAATAAATAATCGAACCCATATTTGCCCGATATgtggtaaatatttttcaaccgCACAGAATCGTAATATACACATTGAATCGCATAATAAGAACTGTGCTTATAAATGCGATATTTGTAACAGTGAATTTAAATGCAAAAACTATCTAGCGAAACATAAAAAGGCCATCCATACCGTTGAAGAGCACGAATGCCCACaatgttttatgaaattcaatAATACCAATAAGTACAAATATCACTTAAAAACGCACGATCCCAATAAGAAGTATAAATGCAAATATTGTGAGAAATCATTTTTACAGCAGCATCATCTTTCTAATCATGAACGCGTTCATACAGGCCTAAGGCCGTATTTATGCAATATTTGCGGCAAAGATTTTCGGCAAGAACATAATTTTACACTTCATCTTCGCACCCATACCGGTGATCGCCCATATGTATGTTCCCTGTGTGGTAAAAAATTTGCGCAACGTGGATCCTTCACATTACATAAGAGACAACACGCTGGAGTTCGTCCATATCAATGTGAACATTGTGGTaaaaatttctaccaaaaatcatcGTTAAATGTTCATCTGCGAACTCATACTGGGGAACGCCcatttaaatgtgatttatgTAGTAAATCTTTTGTACAATCACCACAGttgaaatatcataaaatagCGGTTCATGGTGAATTGACATCTActcataaaaaaactaaaattttaaaagaattggaTAATGTTAAATCAACATCAATCGCAGAGCGTGTACCAATTCtatttaaatcagaaaatgatgttgaaataataattgaatcagAATCTGCTAAAACAGAAGAAACAGCGTCGAaacatttcttatttaaatgCAGTTTATGCATTAAAGAGTTTAAACTACCATCATCGTTGGCATCACATATGAAAACTCATTCTGAAGAACGTAAACATGTGTGTACGGAATGCGGGAATTCATTTAAACGTGCTGAACACTTAAAGGTTCATATTAATGGTGTTCATCTAAAACAAAAACCGTATACATgtgaaatttgtcaaaaaacATTTTCTCAAGCTGGCGACCGAAATATTCATATACTGGCACATACAGGTGAGAAACCACACTCGTGTCCACATTGTTCGAAAAGGTTTCGATTACAAAAAGCCCTTAAAGCTCATATCAGAATACATACGGGAGAAAAGCCTTATAAATGTGAAATTTGTAATATGGGATTCATCACCTATAATGCGTTAGTTGTTCACACAGTTAAGCATCCAGAATCACTTCTATTTTTAGCCAAAAATCGATATGTAAAAAACGATTGA
Protein Sequence: MAFNYSKTCRTCLKQEKEVISLNLIFGDITLIDIPDELSIMRLKISKNDGLPQSICNECVDSLKYVNKFRKLCEKSQLTLEWFHKSKYNINEQIISIKITTQNELEFAEDEFLHNEPNELSSEQKLEIQLKEKILPNEGLTRSGDEWNQNDLVESDSHSDEIQNNNSINHIYFRCGKFCSNNEELIYHKNNICETRSNLQCRYCKEIFVTLDLLDTHIKCVHPINNRTHICPICGKYFSTAQNRNIHIESHNKNCAYKCDICNSEFKCKNYLAKHKKAIHTVEEHECPQCFMKFNNTNKYKYHLKTHDPNKKYKCKYCEKSFLQQHHLSNHERVHTGLRPYLCNICGKDFRQEHNFTLHLRTHTGDRPYVCSLCGKKFAQRGSFTLHKRQHAGVRPYQCEHCGKNFYQKSSLNVHLRTHTGERPFKCDLCSKSFVQSPQLKYHKIAVHGELTSTHKKTKILKELDNVKSTSIAERVPILFKSENDVEIIIESESAKTEETASKHFLFKCSLCIKEFKLPSSLASHMKTHSEERKHVCTECGNSFKRAEHLKVHINGVHLKQKPYTCEICQKTFSQAGDRNIHILAHTGEKPHSCPHCSKRFRLQKALKAHIRIHTGEKPYKCEICNMGFITYNALVVHTVKHPESLLFLAKNRYVKND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -