Basic Information

Insect: Tipula unca
Gene Symbol: -
Assembly: GCA_951394425.1
Location: OX596382.1:45820230-45822328[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 2.5e-05 0.0037 19.0 0.2 1 23 174 196 174 196 0.97

2 14 3.7e-05 0.0055 18.5 2.4 2 23 201 222 200 222 0.96

3 14 3e-06 0.00044 21.9 0.9 1 23 227 250 227 250 0.97

4 14 4.9e-05 0.0073 18.1 4.1 1 23 256 278 256 278 0.98

5 14 0.00057 0.085 14.8 5.5 1 21 375 395 375 396 0.96

6 14 0.1 15 7.7 0.4 2 23 412 433 411 433 0.96

7 14 9.4e-05 0.014 17.2 1.3 1 23 439 462 439 462 0.97

8 14 0.025 3.7 9.6 0.2 3 23 474 494 472 494 0.94

9 14 4.2e-05 0.0063 18.3 3.6 1 19 500 518 500 522 0.92

10 14 0.00011 0.017 17.0 0.1 2 23 528 549 527 549 0.96

11 14 5.5e-06 0.00082 21.1 0.2 1 23 554 576 554 576 0.98

12 14 7.4e-05 0.011 17.6 3.2 1 23 582 605 582 605 0.98

13 14 4.9e-05 0.0073 18.1 0.9 3 23 613 634 611 634 0.96

14 14 0.0024 0.36 12.8 7.4 1 23 640 663 640 663 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	2.5e-05	0.0037	19.0	0.2	1	23	174	196	174	196	0.97
2	14	3.7e-05	0.0055	18.5	2.4	2	23	201	222	200	222	0.96
3	14	3e-06	0.00044	21.9	0.9	1	23	227	250	227	250	0.97
4	14	4.9e-05	0.0073	18.1	4.1	1	23	256	278	256	278	0.98
5	14	0.00057	0.085	14.8	5.5	1	21	375	395	375	396	0.96
6	14	0.1	15	7.7	0.4	2	23	412	433	411	433	0.96
7	14	9.4e-05	0.014	17.2	1.3	1	23	439	462	439	462	0.97
8	14	0.025	3.7	9.6	0.2	3	23	474	494	472	494	0.94
9	14	4.2e-05	0.0063	18.3	3.6	1	19	500	518	500	522	0.92
10	14	0.00011	0.017	17.0	0.1	2	23	528	549	527	549	0.96
11	14	5.5e-06	0.00082	21.1	0.2	1	23	554	576	554	576	0.98
12	14	7.4e-05	0.011	17.6	3.2	1	23	582	605	582	605	0.98
13	14	4.9e-05	0.0073	18.1	0.9	3	23	613	634	611	634	0.96
14	14	0.0024	0.36	12.8	7.4	1	23	640	663	640	663	0.97

Sequence Information

Coding Sequence: atgaatcgattaaataatgtaaaactATGTCGGTCATGTTTATCGGCAATATTTAatggttttaatatatttgaaacgTTATATCAGTTTAACATGCGCCCAGTTCAATCAAAATCTGATGTTAGAGTCTCGGACATTTTTGAACAACTTACGGGAATCAGTCTGAATGAGAATGATGTAAATCTacctaaatatttatgtttatcatGTTTGGAACGATTGTTTAATGcatatgaattttttgagttatgTAAAATATCGGATGTTGAATTGAAAACATCGAATAATGCTGCAGAGGTGAATATGGAAGTTGCCAAATTTGTTGCTCATGTACCATCGAACGGTGGCGACATCTCCGACTCGGACGACCGATTGATGAGTGATAATGATGATGGTGATCAATATAGCGATAATAATGAAGATGTTTGTGATCCTGATTTCGAGAGCTCTAGACAATCGAATATTCCATTAGAAGGGGATGAGAATATGATAAAATCAACTGAAccaattgataaaatatatgattGTTTGAAGTGCAATGAGGTGTTCAGCGGTTCGGCCGAATTAAAGCGGCATGAGCGAGTTCATGAGGGTAATTGGTCATGCACGGAGTGTGATAAAGTATTATCGACTAAGTATACGTTTCGTCATCATATGATGTTACATATGGGAAAACCATTTGAATGTACGGTGTGTACATGGCGATTTTCACGAATCAGCGATTTAAATCGACATACTAGAATTTATCATTTGGCTGGTAAGTGTTACGAATGTGACGAATGCCTCAAGCGATTTTATACCAAGAGCCATTTGACATCACATAAATTGAGTCATTTGAATAAGAAACGGAAAAAggagcaaattgaaaattgtagcaATGATACTGAGAGCATTGATCAAAATGTGAACAAACTACAAGAAAATGATTGTATCCCTCGTTTAACTGATGACAGTAGAATCACGATTAAGTGTGAATCGCAAACTAAATCTGTAACTCAAACCATAAATCTAcgagaaattcgaaatttcccTTTTAATACTACCAAAAATGTTTCTAGTGAAACCCCTGACATCGatataaaaacagaaaatacaACACGTGTTGatacaattttcaaacattatagatgcaaaaaatgttttaaaaaattccggCACCGAAATAATTATTTGAGGCATTTGAAGATTATTAGTAATTGCCAGGCCGACTTAAACTGTCGAACCAATCCGCAGAAATGTCAATATTGTACGGTAATATCGGATAATGTTACCGATCTAAGAAAACATTTAGAATTACATTTGGATCAAGATCCATTTCGTTGTAAaatatgcaataaaaattataaaacttggcTCAAATTAGCTGAACATACACGACAAATTCATTTAATGAAGAAAAAATATCACAGCAACCATTTGTGTACTGTATGTGGCCGAGGGCTTCCATCGGCCAAATTACTAGAAGAACATTATTTCGTACACCAAGGCATTCGAAATTATAAATGTGAATATTGTGATCGGTCATTTTATACTAAAAGCGGGTTAAAACAACATTGTGCGATACATACCCGTGATGTGTTACAATGCAGTGAATGTGGTAAAATTTTGGCGGACAAAGTGAGCCTTCGAAATCATTTAACGATacattttggtaaaaaatttaaatgcccGATTTGTGAAAAACTATTTCCTAATGTGTCGACACTTAATCGACATGTGAAAGTTCATCGAGGCGAACGCAATTTCCAATGCGATCGATGTTCGAAACGTTACATGCGCAGGGGGcatttgaatgatcatattaGAAAGGTACACGAGAATCCAAATACGATGGCGTGTGAGGAATGTGGAATGGAATTTAACCATCGTGGAACGCTTAATAAACATCGGCGTTTGGAACATGCCGAAAAACCGGTGTTTAGATGTAATGAATGCGCAAAATGTTTTGGAAGGAAATCCAGATTAACAgagcatcataaaaaattccatacagTGGGTGATCCtaagaatttcgaaatcattAGTTAA
Protein Sequence: MNRLNNVKLCRSCLSAIFNGFNIFETLYQFNMRPVQSKSDVRVSDIFEQLTGISLNENDVNLPKYLCLSCLERLFNAYEFFELCKISDVELKTSNNAAEVNMEVAKFVAHVPSNGGDISDSDDRLMSDNDDGDQYSDNNEDVCDPDFESSRQSNIPLEGDENMIKSTEPIDKIYDCLKCNEVFSGSAELKRHERVHEGNWSCTECDKVLSTKYTFRHHMMLHMGKPFECTVCTWRFSRISDLNRHTRIYHLAGKCYECDECLKRFYTKSHLTSHKLSHLNKKRKKEQIENCSNDTESIDQNVNKLQENDCIPRLTDDSRITIKCESQTKSVTQTINLREIRNFPFNTTKNVSSETPDIDIKTENTTRVDTIFKHYRCKKCFKKFRHRNNYLRHLKIISNCQADLNCRTNPQKCQYCTVISDNVTDLRKHLELHLDQDPFRCKICNKNYKTWLKLAEHTRQIHLMKKKYHSNHLCTVCGRGLPSAKLLEEHYFVHQGIRNYKCEYCDRSFYTKSGLKQHCAIHTRDVLQCSECGKILADKVSLRNHLTIHFGKKFKCPICEKLFPNVSTLNRHVKVHRGERNFQCDRCSKRYMRRGHLNDHIRKVHENPNTMACEECGMEFNHRGTLNKHRRLEHAEKPVFRCNECAKCFGRKSRLTEHHKKFHTVGDPKNFEIIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -