Tunc003922.2
Basic Information
- Insect
- Tipula unca
- Gene Symbol
- -
- Assembly
- GCA_951394425.1
- Location
- OX596380.1:52143727-52152568[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00052 0.077 14.9 1.0 2 23 175 197 174 197 0.96 2 21 2.5e-05 0.0038 19.0 0.2 1 23 204 226 204 226 0.96 3 21 0.0028 0.41 12.6 1.7 1 23 232 255 232 255 0.96 4 21 0.00022 0.033 16.0 4.1 1 23 261 283 261 283 0.96 5 21 0.0071 1.1 11.3 4.5 1 23 289 312 289 312 0.96 6 21 4.1e-06 0.00061 21.5 4.5 1 23 385 407 385 407 0.96 7 21 5.6e-05 0.0084 17.9 2.3 1 23 413 436 413 436 0.96 8 21 8.4e-07 0.00012 23.7 5.5 1 23 509 531 509 531 0.96 9 21 0.016 2.4 10.2 0.2 2 23 709 731 708 731 0.96 10 21 2.1e-05 0.0032 19.3 1.1 1 23 738 760 738 760 0.96 11 21 0.1 15 7.7 1.4 1 23 766 789 766 789 0.96 12 21 0.0078 1.2 11.2 8.8 1 23 794 816 794 816 0.98 13 21 0.063 9.4 8.3 7.5 1 23 821 843 821 843 0.97 14 21 1.3e-06 0.00019 23.1 2.0 1 23 848 870 848 870 0.96 15 21 9.9e-05 0.015 17.2 2.4 1 23 876 898 876 898 0.97 16 21 3.3e-07 4.9e-05 24.9 0.7 1 23 904 926 904 926 0.99 17 21 0.00015 0.023 16.6 2.2 1 23 932 955 932 955 0.96 18 21 0.00029 0.044 15.7 3.7 1 21 1014 1034 1014 1036 0.96 19 21 4e-05 0.0059 18.4 3.1 1 23 1042 1065 1042 1065 0.94 20 21 4.4e-06 0.00065 21.4 0.3 1 23 1071 1093 1071 1093 0.97 21 21 3.4 5.1e+02 2.9 0.6 1 9 1099 1107 1099 1110 0.88
Sequence Information
- Coding Sequence
- atGTCCAGTTTTCGAGTATCTGAATTGAATTACAAGAAAACATGTCGTACAtgtttaaaacaagaaaaagatGGTATTAGTTTAAAGCAAATATTTTGTGAGACCATAACCCTCATTGTAATTtcggaaatattcaaaatgagaCTGAAGGTATCCAAAAACGATGGTTTACCGCAATCAATATGCAATGAATGTGTTGATAgtttaatctatatacataaatttcggAAGTTATgtgaaaaatcacaaaaaatactAGACTTATCTCATACAATCGTAAAACCTGTATCGATTGAAATGTCGCCTCGCCATGAGTTAGAATTTGTTAATGTTGGTGTTCTCCTCAACGCAGAAGATGAAAATGAAACGGAACCGAGATTGGAAATCCAGTTGAAAAAGGATATTTTATCCGATGACGATGTTACCTGCTCGAGTGATACATGGATACAAAATGAAATGGTTGAATCTGTAGCACAGTCggaggaaaatcaaaataattccaacataaatcaaatttgctTGACTTGtcattattgtaaaaaaattttcgaGACAATAGATTTGTTGGATATTCACATAAAACGTGATCATTCAATAAAGAGACGCACGCATATTTGTCCAATATGCGGGAAAAATTTTGCCACTCCAGAAGGCCGAAAGAGACACATTGAATCGCACAATGATAATTTTCCTTACGCATGTGATATTTGCGATCGTGCATTTACGTGTAAAATTTATCTAACCAAACATAAAAAGGTTGTGCACACAGGATTGAAACCATATTTATGCAATACTTGTGGCAATTATTTTcgacataaatataatttatcactTCATCTTCGCACCCATACGGGGGAACGACCGTATAAATGTAACTTGTGCAGTAAAGCTTATCATCACCTCTCATCATTGAAATATCACACAATTTCGGTGCATAAAGTATTAATACCGATTAATCAGAGAGCCAAAGATTTAGAGAACGGGAATACGGTTGAAAGTGCCCCAATCATAGAAGGTATAGCTATAGCATCCAAAATCAATTCAGAAAATGATGTCGAAATTACAAATGAGtcgaaatctattaaattaaaagaaacggAGTCTAAACAGCGTCATGCCAATCATGAGCGCATTCACACAGGATTAAAACCATATTTATGCAATATTTGTGACAAACTTTTTCGTCGAAAATATCATTTAACACGTCATCTTCGCAACCATATGGGGGAACACCCGTATAAATGTGACTTGTGCAGTAAAACTTATAAAACATCCTCATCATtgaaatatcacaaaatttcgGTACATGATGTATTGATACCGATTGATCAGAGAGCCAAAGATTTAAAGAACGGGAATATGGTCGAAAGTGCCCCAATCATAGAGGGTATAGCTATATCATCCAAAGTCAATTCAGAAAATGATGTCGAAATTACAAATGagtcgaaatttattaaattaaaagaaacggCGTCTAAACGGCATCATGCCAATCATGAGCGCATTCACACAGGACTAAAACCATATTTATGCAATATTTGTGGCAAACATTTTCGTCAAGAATATCATTTAACACGTCATCTTCGCACTCATACGATGGGACGCCTTTTTCGGATATCTGAATTTAATTACAAGAAAACATGTCGTACAtgtttaaaacaagaaaaagatGGTATTAGTTTAAAGCAAATATTTTGTGAGGCCATAACTCCAATTGCAATTCCGGATGAACTAGCCAAAATGAGACTGaagGTATCCAAAGACGATGGTTTGCCGCAATCAATATGCAATGAATGTGTTGATAgtttaatctatatacataaatttcggAAGTTATgtgaaaaatcacaaaaaatgcTAGAAGTATCTCAAATAACCGAAAAACCTTTTTCGATTGAAATGTCGCCTCGCCAtgaattagaatttgttaatGTTGGAGTTCTCCTAAACGCAGAAGATGAAATTGAAACGGAACCCAGATTGGAAATCCAGTTGAAAAAGGACATTTTATCCGATGACGATGTTACCTGCTTGAGTGATACATGGATACAAAATGATTTGGTTGAATCTGTACCACAGTCGGAaggaaatcaaaataattccaacataaatcaaatttgctTGACTTGTCGTTATTGTAAAGAAATTTTCGAGACAATCGATTTGCTGGATATTCACCTAAAACGTGATCATTCAATAAAGAAACACACGCATATTTGCCCAATATGCGGGAAAAATTTTACCACTTCGCAGGGTCGTAAAAGACATATCGAAATGCACAGTGATAATTTTCCGTACGCATGTGATATTTGCGACAGTGcctttaaatgtaaaatttatctaaCCCAACATAAAAAAGTTGTGCACACATTTAAAGAACATAAATGTCcacattgttttaaaaatttcagtagtACCTATAAGTACAACTACCACTTAAAAACGCATGATCCGAAtaagtataaatgtaaatattgtgATAAATCATTTATACTACGGCACCATCATGCCAATCATGAACGCATTCATACaggattaaaatatttgtgcaCTATTTGTGGTAAACATTTTCGAcaagaatataatttaacactTCATCTTCGCATCCACAGGGGCCCTCGTCCACATGTATGTAAGCTATGTGGTAAAGATTTTGCGCAAAAAGAATCTTTTATACTGCATAAGAGGAAGCATACAGGTATTCGTCCATTTAAGTGCGAGCAGTGTGGTAAAGAGTTCTATCAAAAATCCGGTTTAAATGTGCATTTGCGAATTCATACTGGGGAACGCCCTTATAAATGTGACTTGTGCAGTAAAACTTATACACAATCCACACAAttgaaatatcataaaatttcggTGCATGATGTATTGACACCGATTGATCAGAGAACCAAAGATTTAAAGAACGGGAATACGGTTGAAAATGCCCCAATCATAGAGGATATAGCATCCAAAGTCAATTCAGGAAATGATGTCGAAATTACAAATGAAccgaaatctattaaattaaaagaaattacgtCGAATGGTTTCTTATTTAAATGCAGTATAtgcaaaaaacaatttaaattgtcatCATCGTTGGCCGCGCATATGAAATGCCATTCAGAGAACCGTAAACATGTGTGTACAGAATGCGGAAATTCGTTTAAACGTTCCGAACACTTAAAGACTCATTATAATGCGGTTCATCTAAAACAAAAACCGTATGCATGTAATATTTGTGATAAAGCCTTTTCTCAATCTGGCGACCGAAATAAACATATGGTCACACATTCAGATGAGAAAGCACACAAGTGTCCACATTGTTCGAAACGTGGCATTAATGTTGAATGTAAAGATGCTATATCACGTAAACCTCACGTCTCCGTGAATAATATTTGCGTTGATTTGAATAAAGGAAATATTCCACTGAACCCGATGCGACAAAATGTGTTAGGCGAACCATCTCCATTTGAGTTGCTTCGAAACCAGACTTTGAAGTTTTTATCGAAAACTCTGCCAATTTTAAAAGCTGATTACACATTACCAAAAGTGACACAAATCATTCCAGAAGAACCAGTTGCCTGTATCGATAATAATGGGTAG
- Protein Sequence
- MSSFRVSELNYKKTCRTCLKQEKDGISLKQIFCETITLIVISEIFKMRLKVSKNDGLPQSICNECVDSLIYIHKFRKLCEKSQKILDLSHTIVKPVSIEMSPRHELEFVNVGVLLNAEDENETEPRLEIQLKKDILSDDDVTCSSDTWIQNEMVESVAQSEENQNNSNINQICLTCHYCKKIFETIDLLDIHIKRDHSIKRRTHICPICGKNFATPEGRKRHIESHNDNFPYACDICDRAFTCKIYLTKHKKVVHTGLKPYLCNTCGNYFRHKYNLSLHLRTHTGERPYKCNLCSKAYHHLSSLKYHTISVHKVLIPINQRAKDLENGNTVESAPIIEGIAIASKINSENDVEITNESKSIKLKETESKQRHANHERIHTGLKPYLCNICDKLFRRKYHLTRHLRNHMGEHPYKCDLCSKTYKTSSSLKYHKISVHDVLIPIDQRAKDLKNGNMVESAPIIEGIAISSKVNSENDVEITNESKFIKLKETASKRHHANHERIHTGLKPYLCNICGKHFRQEYHLTRHLRTHTMGRLFRISEFNYKKTCRTCLKQEKDGISLKQIFCEAITPIAIPDELAKMRLKVSKDDGLPQSICNECVDSLIYIHKFRKLCEKSQKMLEVSQITEKPFSIEMSPRHELEFVNVGVLLNAEDEIETEPRLEIQLKKDILSDDDVTCLSDTWIQNDLVESVPQSEGNQNNSNINQICLTCRYCKEIFETIDLLDIHLKRDHSIKKHTHICPICGKNFTTSQGRKRHIEMHSDNFPYACDICDSAFKCKIYLTQHKKVVHTFKEHKCPHCFKNFSSTYKYNYHLKTHDPNKYKCKYCDKSFILRHHHANHERIHTGLKYLCTICGKHFRQEYNLTLHLRIHRGPRPHVCKLCGKDFAQKESFILHKRKHTGIRPFKCEQCGKEFYQKSGLNVHLRIHTGERPYKCDLCSKTYTQSTQLKYHKISVHDVLTPIDQRTKDLKNGNTVENAPIIEDIASKVNSGNDVEITNEPKSIKLKEITSNGFLFKCSICKKQFKLSSSLAAHMKCHSENRKHVCTECGNSFKRSEHLKTHYNAVHLKQKPYACNICDKAFSQSGDRNKHMVTHSDEKAHKCPHCSKRGINVECKDAISRKPHVSVNNICVDLNKGNIPLNPMRQNVLGEPSPFELLRNQTLKFLSKTLPILKADYTLPKVTQIIPEEPVACIDNNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -