Tunc027100.1
Basic Information
- Insect
- Tipula unca
- Gene Symbol
- clz9
- Assembly
- GCA_951394425.1
- Location
- OX596381.1:170395456-170397672[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.8e-08 4.3e-05 24.6 0.0 2 39 12 48 11 53 0.87 2 2 6.8 1.6e+04 -2.9 0.0 20 28 543 551 543 551 0.92
Sequence Information
- Coding Sequence
- ATGGCAACGAAATTGAAGCGTCTTCAATACAGCCAGGACGATCTAAAGACTGCCCTTGAAAATGTGGCGAGTGGAATGACAGTGTATACAGCAAGTAAACGATATAAAATTCCCCGCACAACTTTGTTATATAAACAAAGAGGTGTATATGCATTAAATGCATCTATCGGTCATCCAACAGTGTTGACTACTGAAGAGGAGCAACAAATAACACAATGGATCGTTTATATTGGTAAGGCTGGTTTTCCAGCAACAAAGGATCAACTTTTGGATAGCGTTCAGCTACTGCTTAAAAAGCTAAATcgtccaaataaatttaaaaatggaagaCCGGGAAGGCGATGGTACGAGGggtttttaaaaagaaatccaGATATTTCAGAACGTGTGTCTCAACATTTAGCTAAAAGCCGTGCTGTGATCAGAGAACATAATATACGTGACTGGTTCCAACAGattaaaacgtattttgcagaaaataatTACTTACATATTCTTAATGATCCGAAACGTATTTTCAACTGTGATGAGAGTGCATTTTTACTGTCTCCTAAGGAAAAATCCGTGTTAGTCAGAAAAGGGGAAAAGGCGGTATATAATATGAGCAGCAACGACGAAAAAGAATGCCTGACTACATTGATTATGATGAATGCTGCAGGCGATATTCCTCCACCGATGgtggtatataaatataaacgaatACCGTTCGCATTAGGACGAAAAATGCCAAACGGCTGGGGTATGGGCTGCTCTGAATCCGGATGGATGAACGGGGAAGTGTTCTACGAATATGTGGCAAATGTTTTTTTGCCATGGCTTGATCAAAATAGTGCGGAATTGCCAGTGGTCTTATTTTTAGACGGACATGTTTCGCATCTATCGCTAGCCTTAAGTGAATTTTGCAAACAACATCAAATTATTCTAGTAGCACTTTACCCAAATGCAACCCACCTTTTGCAACCACTAGACGTTGGGGTTTTTCGCCCCTTAAAATTGGAATGGAAAAAAACTGTACATAGTTGGAAACTTCAAAATGAAGGTAAAAAGTTGAGAAAGGAAGATTTTGCTCCTTTACTGGCAAAAGCCTTACCAACAGCTGCTACACCAACTACGATTACAAATGCGTTCAGAACATGTGGAATATATCCATTTTCGTCTGACGCTATTAATTACCGTAAAATGATAAAAGACTCACTACCTATACCAAAACCAACAACACCTAGAGTTGATAATGAAGTACGACCGGTGTCTTTTGTGGAAACATTTGAATCTTTCTTAACAGAACAGAAATTGCAAAGCTTTAGAGACTCCGAAGGTATATGGCAAGGTAATAAAGAGGATCATAATCTGTACCATATGTGGGTTGATATAAGAAAGAAATATcaaccaaaacaaattaattttcctacTGTTACTGACTCCACAAAATTAAACGACACTATTGcgaataatatacaacaagagAAGTCCGCTCAAGAAATTGGCGAAgccattttggaaaatattgatcTCAATGCAGCGTTTAATGATTACGATGTTAACCAATTGTGGCAAAATGTTGATGGAGTAGGTGACGTAATTACGCTGCAAATCGAAAACCACAAAGACAGTGATGAAAATATCCGTAACCAAGCCTCGAAGCATTTTGAAATAGAAACCGAAAACGAGCATTCATTTCTATCGAATGTTCATACCCCCTTTAAAAATAGTTTCTTTTGGCCAGAATCTAAACCGGATGACGCATCTATAACCAAAATCAAGAAACGAATTCCGTCTGTTATAGTATCTTCGGAtgagtatataaattataatttaaaaaaaaaagctgaaAAAGAACAGAAAGAGCAAGACAAACAAGACCGAAAAAGGATAAGGGAAGCCAAAAAGAGTTCCAACGACAGTACcgtgaaaaaatcgaaaatactaAATACACCACTTACCGAAAAGACTACAACGAATATCAGCCAACTTAGGGTTGGCAATTATGTTATTATTCGGTACGAGGAGGAATATTTTCCGGgtattattttacaaacaaaaaataatgaagcGTCTGTAAAAGTAATGGGAATGAGTGGTCCAAATTGGAAGTGGCCTGACAAAGAGGATATTCTTTTTTACCCCATTCAagatataattcaaattattccaGAACCTGAACTTCTGAATTCTCGAGGAATCTACAGTGTACctgacatacaaaaatttaaagcttaa
- Protein Sequence
- MATKLKRLQYSQDDLKTALENVASGMTVYTASKRYKIPRTTLLYKQRGVYALNASIGHPTVLTTEEEQQITQWIVYIGKAGFPATKDQLLDSVQLLLKKLNRPNKFKNGRPGRRWYEGFLKRNPDISERVSQHLAKSRAVIREHNIRDWFQQIKTYFAENNYLHILNDPKRIFNCDESAFLLSPKEKSVLVRKGEKAVYNMSSNDEKECLTTLIMMNAAGDIPPPMVVYKYKRIPFALGRKMPNGWGMGCSESGWMNGEVFYEYVANVFLPWLDQNSAELPVVLFLDGHVSHLSLALSEFCKQHQIILVALYPNATHLLQPLDVGVFRPLKLEWKKTVHSWKLQNEGKKLRKEDFAPLLAKALPTAATPTTITNAFRTCGIYPFSSDAINYRKMIKDSLPIPKPTTPRVDNEVRPVSFVETFESFLTEQKLQSFRDSEGIWQGNKEDHNLYHMWVDIRKKYQPKQINFPTVTDSTKLNDTIANNIQQEKSAQEIGEAILENIDLNAAFNDYDVNQLWQNVDGVGDVITLQIENHKDSDENIRNQASKHFEIETENEHSFLSNVHTPFKNSFFWPESKPDDASITKIKKRIPSVIVSSDEYINYNLKKKAEKEQKEQDKQDRKRIREAKKSSNDSTVKKSKILNTPLTEKTTTNISQLRVGNYVIIRYEEEYFPGIILQTKNNEASVKVMGMSGPNWKWPDKEDILFYPIQDIIQIIPEPELLNSRGIYSVPDIQKFKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -