Tunc040376.1
Basic Information
- Insect
- Tipula unca
- Gene Symbol
- -
- Assembly
- GCA_951394425.1
- Location
- OX596382.1:146661500-146662669[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00013 0.31 12.2 0.0 23 36 182 196 164 203 0.68 2 4 7.7e-11 1.8e-07 32.2 0.1 5 38 217 250 215 257 0.88 3 4 6.6e-05 0.16 13.1 0.0 7 38 266 297 265 302 0.91 4 4 1.4e-09 3.4e-06 28.1 0.1 1 39 319 356 319 362 0.90
Sequence Information
- Coding Sequence
- atgacaaattttaaatcgttaaattataatgagtatttatttcaatttatttgtgaaaataGTAATTATGATGTAAAAATAATACCAAATGATTCTACGGCAATTATTCAAGCGCACAGAATTATATTAGCATCTGCAAGTGATTATTTCTACAAGATATTTAAAGAACTTCCAAATTCCGATGATGAAGTAATAATCCATGTACCAGATTTTAATTACTGTTCagttaatttaatcataaattttatttatatgggaGAAATCGAAATTAGCACAAATGATTTAAATACCTTTTTGGATATATGTAACTTATTTTCGTTAAAAAGTTTTGATCGTCTTATTGACAATGATGGAATAAACAATAATGGAATGATCCATCCTACAAAAGTGGATCAGCAATTTTCCgagaattatcaaaatattaaacatcaAAATGATTCGTCTGGTTTATCTATTTACAATGAAGATACTATCTGCAGTACGCAATTGCAGTTTGATAAAGCTATTGAAGAACTAAAAAATGGAGGAAAGCTTAGCGACATTTCTCACAAATATAACATTCCAAGATCAACTTTATATTTTCGAGCAAGAAAATGTAGCATACAACTACGTATAAGAGAAAAcggatataataataaatataaacatattaatGAAGCAATGCATGCAATCATTAAGAATGgcatgagttataaaaaagctGCAAAATTATACAGTATTCCAGCCACAATACTTTGGCGACACGCTAAAGCATTAATGCACGAAGAACGATCagtaacaaatataaataagtataaAGCAATACAAGAATTACAAAATGGAAATTTGAGTTTAAGGgatttatataaaaagtatAAAGTATCAATTTCAACTTTATATCGCGAAAAGAAGAAATTATGTATGGAAGGAAAATTACCACAAGACTGTTTATTACAAAATCGTTTACGGTCAACAACGcaagaaaatattaatcaagCCTATGATGCATATAAAAATGGTATGTTACAAACTCGGGCTGCAGCATTATATAACATACCTAAAACGACATTTTCGCGATATGTAAAACGTATGGCCACCGAAAATTCCAATATTTCAACGACGGTCAACGATGATGTTATAGTTGATGTTGATTGTGATACAACCGATTCAGAAAATTCGTTTGGAAGCTAA
- Protein Sequence
- MTNFKSLNYNEYLFQFICENSNYDVKIIPNDSTAIIQAHRIILASASDYFYKIFKELPNSDDEVIIHVPDFNYCSVNLIINFIYMGEIEISTNDLNTFLDICNLFSLKSFDRLIDNDGINNNGMIHPTKVDQQFSENYQNIKHQNDSSGLSIYNEDTICSTQLQFDKAIEELKNGGKLSDISHKYNIPRSTLYFRARKCSIQLRIRENGYNNKYKHINEAMHAIIKNGMSYKKAAKLYSIPATILWRHAKALMHEERSVTNINKYKAIQELQNGNLSLRDLYKKYKVSISTLYREKKKLCMEGKLPQDCLLQNRLRSTTQENINQAYDAYKNGMLQTRAAALYNIPKTTFSRYVKRMATENSNISTTVNDDVIVDVDCDTTDSENSFGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01458611;
- 90% Identity
- iTF_01458611;
- 80% Identity
- iTF_01458611;