Tunc043987.1
Basic Information
- Insect
- Tipula unca
- Gene Symbol
- retn
- Assembly
- GCA_951394425.1
- Location
- OX596382.1:198557964-198602819[+]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6 8.7e+03 -1.4 0.0 27 64 67 104 47 112 0.64 2 2 5.8e-21 3.2e-17 64.1 0.0 2 79 211 286 210 287 0.93
Sequence Information
- Coding Sequence
- ATGATTCGACTAGACGTACTATCTCAAACGTCGCATATAGATGAGCATTCGGATCGTGAAGACGAGATGCGTGACTGTGATTCAAGTGACGAAGGCGTAAATGTTAATCCAAATACATCGATACCACATCAGGGTATCGATTTTAGTCGAAGCCCCGAACAtcatataaatgaaaatcatatgagcCAACATTTTGCTTCAAATCATCCGCTTAATGTATTAGGATTAACCGGCCTAAATATGTCCAGTCTACAgtcattacaaaatttacaaaatctacAACACAATGATGtgctggaaaaattaaaaatgcaagtGCGCGATATGAAAGTTGGACTAATGGGTGATCAAGATTTTCCGTTACATTCATTTGGTGGATCACTAACAACACCGGCTAATACATCGTTTACGGTGCCACAATTGGCCGGACAACCACAAAATTTATCACAATCCCAGAATGGATTTCCGTTTACAACGCCAAATATTCCACTTACAAAAGACGGAAATCCAGGATCAAATTCCTCTACATCTAGTGAAACGTCGAATTCATCGCAACAGAATAATGGATGGAGCTTTGAGGAGCAGTACAAACAAGTTCGACAGCTTTACGAGATAAATGATGATCCAAAACGGAAGGAATTTTTGgatgatttgttttcgtttatgCAAAAAAGAGgaaCACCAATAAATCGCCTGCCAATAATGGCCAAATCGGTGCTGGACCTTTACGAACTATACAATTTGGTAATAGCACGTGGTGGTCTAGTGGATGTGATCAATAAAAAGCTTTGGCAAGAAATTATCAAAGGACTACATTTACCGTCAAGCATTACAAGTGCTGCATTTACCCTACGAACACAGTAa
- Protein Sequence
- MIRLDVLSQTSHIDEHSDREDEMRDCDSSDEGVNVNPNTSIPHQGIDFSRSPEHHINENHMSQHFASNHPLNVLGLTGLNMSSLQSLQNLQNLQHNDVLEKLKMQVRDMKVGLMGDQDFPLHSFGGSLTTPANTSFTVPQLAGQPQNLSQSQNGFPFTTPNIPLTKDGNPGSNSSTSSETSNSSQQNNGWSFEEQYKQVRQLYEINDDPKRKEFLDDLFSFMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -