Tlat032305.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- grn
- Assembly
- GCA_963932295.1
- Location
- OZ010738.1:180673733-180751917[+]
Transcription Factor Domain
- TF Family
- zf-GATA
- Domain
- zf-GATA domain
- PFAM
- PF00320
- TF Group
- Zinc-Coordinating Group
- Description
- This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contain a single copy of the domain.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.31 2.5e+03 -0.7 0.1 6 17 6 17 5 19 0.87 2 3 1.4e-19 1.1e-15 58.0 4.7 1 35 338 371 338 372 0.98 3 3 4.2e-18 3.3e-14 53.3 6.0 1 35 395 428 395 429 0.97
Sequence Information
- Coding Sequence
- atggataTGACATCGACGGCGGAGACGGCACGTTGGTACGATAATCCGCGTTTGGGGGGATCGCCGAGCACGCTCGGTGGACATGGTAGCGGCGGCGGTGGTGGACATCAATCGTCTGGGCACGATGCCAGTGATATGGGCGCATTTTATGCACTAGAAAATAGTAGTCGTCGTCATTATTCGTATGGATATACACCCGccTCAAGAATGCCAACATCGCATACATCACCACAAGTATGTCGACCACATTTTCATTCGCCGCTCCATTGGCTGGGCGATGCACCAAAATCGTTGCCGCACGGCAGTGCATGGGGTTCGCCGTTCGCCTGTCCGCAAGATCCACAGGACAAAGTTAGTCAAATTCAAGTGGGTGGACCTGGCCAAACAGGTGCccaacatttattttcatttccacCAACACCTCCAAAGGATTCAACACCTGATTCAGTACAAACGGGACCAGCCGAATATCAGgcGGCAGTCAATGCATTCATGCATACGGCACAGCAGGCGCAATCAACTACCTCAGTCACATCGGATTCTAGTTGTACATTAGATATAAAACCGACGATACCGTCGAGCGGCCAATCGGCGCCAAAACAACGTGAAGGTACGACAACAAATAATAGTAtgaataatagtagtaataataataacaatagtaataatccGTTGAATAATGGACTATTCgatacaacacaacaacaacaacagcaacaacaacaacagcaacaacagcaacaacaacagcaacaacagcaaaatggtggaaataataacaataataataatagtaacaataataataataatagtgctGGAGGAAGTGGTGGAGGCGGAGGAGGAGGTGGTGGTGGAGGAGGAGGCGGTGGACTATATAACGGATACGATAATACCTATGGATATCATCAAACATTTCAAACGAAGTTTGAATCAAGTGGTAGACCAACAATAAGCCCACATGTTAAACCACAACGTACCAAAGCTAGAACTAGTGCCGAGGGTAGAGAATGTGTTAATTGTGGTGCAACATCAACCCCGCTATGGCGAAGGGACGGAACCGGACATTATTTATGTAACGCATGtggattatattataaaatgaacGGGCAAAATCGACCGCTTATCAAACCAAAACGAAGACTGTCACTTCAGAGCGCAGCAAGGCGTGCCGGAACATCGTGTGCTAAttgcaaaacaacaacaacaacgctATGGCGACGGAATCAGGGTGGCGAACCCGTGTGCAACGCATGCGGCCTATATTTTAAACTACACAATGTTAATCGGCCACTAACGATGAAAAAGGAGGGTATCCAAACGCGGAATCGTAAACTGTCATCGAaatcgaaaaagaaaaaaggtgTCGGTGGCTCATGTTTACCGATCGGTAGTCATTTGGGTGTCGGCGGTGGAATTAGTGATCTAATGAAACCGCTCGATCATTCGAAAACGTTTGGCGGTGGCTTCCCCGGATCAATGgGTCAACACGGACACCTATCGAGCGGTTTACATCCAGCGCACGCGCATATGGCGCACAGCGGGTGGTACAGTGGCATGGGGGCACTAGGCACATCAAGTAGTTTGCAAGGTGGTTTCTCATCGAGTGGCTTAGGTGGTGGTGTTGTACCGCATTCCCAACCATATCCGCATGTCACCTCGCTTGGATTAAACTCAATGGCGGCTGCATGGAGGTCAGATTACACGTGA
- Protein Sequence
- MDMTSTAETARWYDNPRLGGSPSTLGGHGSGGGGGHQSSGHDASDMGAFYALENSSRRHYSYGYTPASRMPTSHTSPQVCRPHFHSPLHWLGDAPKSLPHGSAWGSPFACPQDPQDKVSQIQVGGPGQTGAQHLFSFPPTPPKDSTPDSVQTGPAEYQAAVNAFMHTAQQAQSTTSVTSDSSCTLDIKPTIPSSGQSAPKQREGTTTNNSMNNSSNNNNNSNNPLNNGLFDTTQQQQQQQQQQQQQQQQQQQQQNGGNNNNNNNSNNNNNNSAGGSGGGGGGGGGGGGGGGLYNGYDNTYGYHQTFQTKFESSGRPTISPHVKPQRTKARTSAEGRECVNCGATSTPLWRRDGTGHYLCNACGLYYKMNGQNRPLIKPKRRLSLQSAARRAGTSCANCKTTTTTLWRRNQGGEPVCNACGLYFKLHNVNRPLTMKKEGIQTRNRKLSSKSKKKKGVGGSCLPIGSHLGVGGGISDLMKPLDHSKTFGGGFPGSMGQHGHLSSGLHPAHAHMAHSGWYSGMGALGTSSSLQGGFSSSGLGGGVVPHSQPYPHVTSLGLNSMAAAWRSDYT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01455343;
- 90% Identity
- -
- 80% Identity
- -