Tlat010742.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- Thap1
- Assembly
- GCA_963932295.1
- Location
- OZ010736.1:157712997-157715175[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 4.8 6.2e+02 2.3 0.1 5 16 168 179 167 181 0.82 2 11 0.031 4.1 9.1 1.9 2 23 342 364 341 364 0.94 3 11 0.019 2.5 9.8 0.8 2 23 370 392 369 392 0.92 4 11 0.007 0.91 11.2 0.9 1 21 422 442 422 443 0.94 5 11 2.6 3.3e+02 3.1 1.7 2 20 451 469 450 471 0.91 6 11 0.00019 0.024 16.1 3.2 1 23 501 523 501 523 0.98 7 11 0.099 13 7.6 0.7 2 19 532 549 531 552 0.93 8 11 0.0021 0.27 12.8 0.7 1 23 581 603 581 603 0.96 9 11 8.8e-07 0.00011 23.5 1.4 1 23 609 631 609 631 0.98 10 11 0.00063 0.081 14.5 1.7 3 23 639 660 637 660 0.96 11 11 0.041 5.4 8.8 0.2 1 16 666 681 666 683 0.88
Sequence Information
- Coding Sequence
- ATGCCTTCAACGTGTATAATTCGGGGATGTAAAACCAAATATGCTACAGACGTATCGTTTCACAAATTtccagttaaaaatattaagctGCTGGGCCAGTGGATAAAATTCGCAAATCGTGGAGACAACTGGAAACCAACTCGATGGACGTCGATTTGCAGTTCACATTTTCAACGTACTGATTTTCAAGTTCGGACGAGCCAACGAAAAACATTGAAGAAATTTGCTGTCCCAACGATTAATGAAGCGATCGTTGACGATATGTATCAGACGGGAAATGATTCAGGTGGTGAGACAGGTGTCAATGAGTATACGGAAACTATGCTACCACCTCGATCACCTATGTCGTACAATACTTACATTGAACCGTTGTGCCATTTCTGTGGAGAAAAGTCTCATGtattcaatttttctaaattgaatcTAGCACATTTCAATGCGATTCTCAGAATGTATCCATCGTACCTGAACCTAAACGAGTACAGTGATAGTCATATAAAAATCTGTGATAAGTGCTACAATACGATTGCGAATTTTGAAGTATTTCTGACGAACTTCTTAAAACTACATAGTTGTGGTGAAGATGTGGAGCATCCCGCTGAATCTCCTGAACTTGGTGACGACACATACATGGACACCAGTAAGCTGcagaaagtgaaaataaaacagGAACCAATAACGGTCATAAAGGAGGAGATTTTAGAGCCGGGACAGCGATTTATTCCATCTGAACTACTGACGGGACAATCGTTGAGCAATAATGATGTAATCGAAGTGACACCTCCTAACGACGTTATAAACATTATCGAGGAGGATAATAACGGAAATACGGGCGAAATTCACGAAGAATTCGACTTTGAACTAAAGTCGGAAGAGGTCAAAGTTGAGGTCGTCGATACGAGTGATGTACGAGATATAGAAAATGCTCGTCATGATCATACCTACACCAAATATACATGCGAAAATCGATACGAAACGAATGAGTACGATAATGatcaaaaaccaatatttttcgATCAGATCACATGTACCATGTGTAATTCGTACTTTGAGGATCACCAACAGTTGGAAAAGCACACCAGCATCTTTCACACGTTTCACAGTCAAACCTGTAACGAATGTTATCAAGAGTTTAAAACTCTGTACGATTACTTGATTCACAAGAACGATACTCATGGTCGAATCAAAACGAATACCGATGACACTGATGAACCCACCGTTGTTAACGATGCAACACCCACCAAAGAGCCGaatgaacaaaaatttatcTGTGATTTATGTAACGAAACTCTGGCCACCAAAACATCATTGAATCATCACAAAAAGTATATATGCAAATTTAAGCTACAGTATTGTAAAGTGTGCAAGGTTGGTTTTAATGATATGGATGTTTTTCGAACGCATGTATGCCATAAAAAAGCAGTGCTTCGGAATGGCGGTGGCGGTGGAAATCTTATacgaaataaaacaacaaaactaaacttTATGAAAAATGGCCGATATACATGTAAATTCTGTTCGCGCACCTATGGCAAATACTACAATCTGCTCAAGCACATTCGGTTGCATCGTCCGATTCACGAATGGAATTTAAAATGTGGCAATTGTGGCATGCTATTCGATCGAATCTATGATCTGAATCAACATTGTCGCCGTAGTCTATGCACCATAAATCCCAACGAACCAATAATCACGAAGCTGAACTTTAATTCGTCCGGATTGAAACGGCAAAAGTTGAAGTACGTTTGCCTTAAGTGCAACAAAATACTATCGTCGAGTAAAAGTCTTAAATTGCACGAGTACATTCACAGTACGACGCGGCCATTTGTGTGTGAAACGTGTGGTAAAAAGTTTCGTAGCCCCATCAATTTGAGGCAGCACAAGAAGTCCCACATCGATCAAAAAGCGTTTGGATGCAATTACTGTGAGAAGAAATTCAAATGGAAATCGAATTTAAGATTGCATGTGAATTCGTTTCACTTGGACATAAAACCGTATTCATGTCCCGATTGTAATTATCGGTATGCTAGACGGCGCGAGATGCTGAGATGCAAGCATTCGATACAATTGTGTAATAAAATGTGA
- Protein Sequence
- MPSTCIIRGCKTKYATDVSFHKFPVKNIKLLGQWIKFANRGDNWKPTRWTSICSSHFQRTDFQVRTSQRKTLKKFAVPTINEAIVDDMYQTGNDSGGETGVNEYTETMLPPRSPMSYNTYIEPLCHFCGEKSHVFNFSKLNLAHFNAILRMYPSYLNLNEYSDSHIKICDKCYNTIANFEVFLTNFLKLHSCGEDVEHPAESPELGDDTYMDTSKLQKVKIKQEPITVIKEEILEPGQRFIPSELLTGQSLSNNDVIEVTPPNDVINIIEEDNNGNTGEIHEEFDFELKSEEVKVEVVDTSDVRDIENARHDHTYTKYTCENRYETNEYDNDQKPIFFDQITCTMCNSYFEDHQQLEKHTSIFHTFHSQTCNECYQEFKTLYDYLIHKNDTHGRIKTNTDDTDEPTVVNDATPTKEPNEQKFICDLCNETLATKTSLNHHKKYICKFKLQYCKVCKVGFNDMDVFRTHVCHKKAVLRNGGGGGNLIRNKTTKLNFMKNGRYTCKFCSRTYGKYYNLLKHIRLHRPIHEWNLKCGNCGMLFDRIYDLNQHCRRSLCTINPNEPIITKLNFNSSGLKRQKLKYVCLKCNKILSSSKSLKLHEYIHSTTRPFVCETCGKKFRSPINLRQHKKSHIDQKAFGCNYCEKKFKWKSNLRLHVNSFHLDIKPYSCPDCNYRYARRREMLRCKHSIQLCNKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01455240;
- 90% Identity
- -
- 80% Identity
- -