Tlat023185.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- -
- Assembly
- GCA_963932295.1
- Location
- OZ010737.1:195481317-195483873[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.2e-06 0.00067 21.1 0.8 2 23 250 271 250 271 0.97 2 14 5.7e-05 0.0074 17.8 2.0 1 23 276 299 276 299 0.98 3 14 0.059 7.6 8.3 0.3 1 23 370 393 370 393 0.93 4 14 5.5 7.1e+02 2.1 1.4 3 23 398 419 396 419 0.92 5 14 1.8 2.4e+02 3.6 1.6 3 23 437 457 436 457 0.93 6 14 3 3.9e+02 2.9 0.8 1 19 476 494 476 499 0.87 7 14 0.48 63 5.4 0.5 1 23 540 562 540 562 0.97 8 14 2.9 3.7e+02 3.0 2.4 2 23 567 591 566 591 0.91 9 14 6.9e-05 0.0089 17.5 1.3 1 22 597 618 597 618 0.95 10 14 0.0066 0.86 11.3 1.4 1 21 625 645 625 646 0.94 11 14 1.2e-06 0.00016 23.0 1.7 3 23 655 675 654 675 0.99 12 14 2.9e-06 0.00037 21.9 0.4 1 23 681 703 681 703 0.97 13 14 0.0021 0.28 12.8 3.2 1 23 709 731 709 731 0.96 14 14 0.16 21 6.9 5.7 1 23 737 760 737 760 0.97
Sequence Information
- Coding Sequence
- ATGGAACTTTCATCTGAATTGGAATTAGATATACCGAATATGTGTCGTGTATGTTTattacaaaaagaaaaattaaataatatttatacaaattgtaTTGTTGAGGGGTACATGATACCACTACCTGAAATTATCAAATCATGTTTGGATTTACATcTAAAGAAAGATGATAAgaatttgccaaaaaaaatttgcgATCAGTGCAAAATACAggtcataaatttttattcattcaaggaAAAATCGAAGAAAGTTGAGGAAGCTCTCAAAAATTTACTTAGCTCATCGAAATTGGTAAAGGAAGAAAAACCAGTAGTTGTTGATGAAGGGGACGGTAACGAAACTGAGGTGGACCAAGAGGAAAATAATGAAACTCCGATTAAAATTGAAGATTGTTCGATTATTGATGAAGTGGAATATGATGAAAACGAAATATTTGAGGAAAATAATGAACCCAAAGTTTTCGAACCCGCAACAAGTGAGAATATTTTACCAGATGAAAATATAAGTTATTCAAGTACCGATCAAACATTAGAAATGGTAAAGGACAATGACGTAGTTCGGAACGAACCGGTAGACGTACAACCAACAGTGGTAGAATTCGATGATATGGTAGTAAACGTAGAAGAAATTGAAGAGTTAGACAATATTGGGGATGACACTCTAGAGTCGTGTGATCTCTTACAAAACGTATTAAAACTATCAACAATCAATGAATCGCATGAAAACGGTAGCAATTCATTAAACGTTTGtaatatttgtgataaaaaattcgaaacaataaacaatttaaaacggCATTTAGACACGCATAAtggtatttttttcaaatgccGAATTTGTCCAAAAATATATGCGCATCAAGCCTCACGAAATCGTCACATGAGAATCAGGCATTCAAAACAAGTAAAAATTATCATATCACAAAAAGATAATCCTTTTCAGAGGAACGATCCGTTAAACCCTCCAATTCAAATAACATCCACCGAAGATGCGACACCAAATCAATCGATAATAGGCAAACAAGAAACAAATGATAAAAGTTCAGATGAGCATTTATTGGAACTGCCGAGCACGTTTGATGAGATGTATGTGGatgattatgattatatatGCACCATTTGTGATGCAAATTTTAAGCTTGAAACCTCATATATCGAACATTCAAAATACGAACATCCTGATCTGTTTTGTAGTAAATGCTGTAAATTATTTGCAAGTCCAGACGAACGAAATGTACATTTATCACAAGAGCATAATTCTGACACACGGCTCAATAAATCGAATAATGTTCAGTATAGAAATTTTTGCCGATTTTGTCAAAAGAAATTGAAATCGGTTATTGAATTAAACACACATAAAGATTTACACGATTCATTGAATAAATGGATGGATAGTTCGGCATCAACGCCAATGATCTCATTCTTTACTTGCTACAAATGTAGTACGATCTTTTTAACCGAAGAAGGTTTACAAGATCACAATGCCTTTAAACATGGTGACAGtaccaaaaaatttaatgtagATGACGATAGTATTGAGTGTACCGATTATCAGTTTCTTGATGATGATGAAGCTATAATAGCAAATGAAGCAAATTTACCCGATGAAAAACCATTTTCTTGTGGTTTATGCCATGTTCAATTGTTTAACGAAAACGAAATGCgaaatcatattataattcactctAACAAATTGTCTTGTCCATTTGATGAATGTGGATGCGAGTATAACAGTTTCTCTAGATTTAGTTTACATATAATTCATAGGCATTTGAATCGCGAAGACTTTCGGTGTATGCATTGTGGAGAATCGTACAATACATATGATGAtttacaaaatcatttaaaaaaattttgtcccgaaagaaaatataattgtacACATTGTGaaaaaagttttttctCCTTTAAAGCTTTGGGTATTCATTTAAAAAgttcgattgaaaaaaaagCTATTCTTTGCCAGATTTGTGGCAAATCATTTTCACATCAGGGTGAACTAAAGATTCATTCCAGAACACATACCGGAGAGCGTCCTTATCAATGTAAGATATGTGGCAAATCGTATAAAACTGCTAGTATGAGAACGGCGCATATGGACGCCCACATTCAAGGAAAAACATTCctctgCACAATTTGCGACAAAAGGATGCAAACTCGGACAAGTTTTCGCAATCATATGCGACGACATACTGAAGATAAAAAACACCAGTGCGCAATTTgcatgaaaaaattttttacgaAGTACCATGTTAAGCTACATACAATGAAGATTCACGATAACCCCaaacgaatacaaaataaaaatattggaattgATTTAGCGAAACTACCCTCATACCAGACAGCCACTTAG
- Protein Sequence
- MELSSELELDIPNMCRVCLLQKEKLNNIYTNCIVEGYMIPLPEIIKSCLDLHLKKDDKNLPKKICDQCKIQVINFYSFKEKSKKVEEALKNLLSSSKLVKEEKPVVVDEGDGNETEVDQEENNETPIKIEDCSIIDEVEYDENEIFEENNEPKVFEPATSENILPDENISYSSTDQTLEMVKDNDVVRNEPVDVQPTVVEFDDMVVNVEEIEELDNIGDDTLESCDLLQNVLKLSTINESHENGSNSLNVCNICDKKFETINNLKRHLDTHNGIFFKCRICPKIYAHQASRNRHMRIRHSKQVKIIISQKDNPFQRNDPLNPPIQITSTEDATPNQSIIGKQETNDKSSDEHLLELPSTFDEMYVDDYDYICTICDANFKLETSYIEHSKYEHPDLFCSKCCKLFASPDERNVHLSQEHNSDTRLNKSNNVQYRNFCRFCQKKLKSVIELNTHKDLHDSLNKWMDSSASTPMISFFTCYKCSTIFLTEEGLQDHNAFKHGDSTKKFNVDDDSIECTDYQFLDDDEAIIANEANLPDEKPFSCGLCHVQLFNENEMRNHIIIHSNKLSCPFDECGCEYNSFSRFSLHIIHRHLNREDFRCMHCGESYNTYDDLQNHLKKFCPERKYNCTHCEKSFFSFKALGIHLKSSIEKKAILCQICGKSFSHQGELKIHSRTHTGERPYQCKICGKSYKTASMRTAHMDAHIQGKTFLCTICDKRMQTRTSFRNHMRRHTEDKKHQCAICMKKFFTKYHVKLHTMKIHDNPKRIQNKNIGIDLAKLPSYQTAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -