Tlat026267.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- -
- Assembly
- GCA_963932295.1
- Location
- OZ010738.1:54423749-54425418[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.052 6.7 8.5 0.6 2 23 200 222 199 222 0.96 2 10 0.0066 0.86 11.3 0.6 6 23 231 248 231 248 0.99 3 10 1e-05 0.0013 20.1 0.8 1 23 254 276 254 276 0.97 4 10 6.2e-06 0.0008 20.8 1.4 1 23 284 306 284 306 0.96 5 10 3.9e-05 0.005 18.3 0.4 1 23 313 336 313 336 0.96 6 10 0.011 1.4 10.6 6.7 1 23 342 365 342 365 0.96 7 10 0.09 12 7.7 0.2 2 23 374 395 373 395 0.96 8 10 0.00019 0.024 16.1 0.3 3 23 402 423 400 423 0.96 9 10 6.8e-06 0.00087 20.7 0.8 1 23 428 450 428 450 0.98 10 10 5.5e-06 0.00071 21.0 2.4 1 23 456 479 456 479 0.97
Sequence Information
- Coding Sequence
- ATGGAAATCGATCCATCAAATTGTCGTTTATGTTTAACATCATCTGATGGCCAAATCAATGTGTTCCGAGAAAAATCATCAAATCAGAGTATAGCCTCGATTTTAACACAACATTTTTGGTATCAGataaatgaaaatgatagTTGTAAGACTATTTGTTCCACTTGTTGGACAAAAGTTGAAGATTTTCATATCTttcataattatgtatataatatccATTACGAATGTCTATCAAAAGTCAGAGTTGAGCTCGACGATAATGAAGGGGGAAAATCTGAACAAGATCACGAAGATAATGAATGTAAGGGATCCGAACAAAGTTTTGGTGACAATGGTAATGATGATAATGAAGATCTTAGCTTAGAAGATCAAACAAAACCCAAGGTTGATAAAAAACCAACTAcgaaatctaaacaaaaaaatcaagtaTTTAAGGAATTGAAAAACACTTTTGATGTAACGAGTTTAGTGAATCAAACCAATGTAAATAAGAAGCCAACTACGAAATCAAATCGACTCCAAGCACGGAAAAATACAGAATATCAGGATATTGTGGAATTAGAAAATCGACAAATTCTAGAATACTTCAAAATGGTATGCGAAGTCTGCTTGATGGAGTTCGATAAATTTGAACATGTACAGGCACACTATCGCAAAGAACATAATCAGCAAGGCTATTTGACATGTTGTAATAAGAAATATACCAAACGATCGCTGCTAGTTGATCACATCCAAAGACATATAAATCCAGAtgcatttaaGTGTGATTTGTGCAACaagatttttaacaataaacgtGGGTTAAGGGAGCACATCGGACGACATCGATCTCGTGATGAACGTCCGTATAAATGTAAGGAGTGTCCGAAAAGTTTTTCTAAAAAGTATTCATGGGTACGACACGCATATGTTcataaaaatgaagaaaacaaatttatttgcgAAGATTGTGACAAACCATTTGGAACTAAACTTCTACTACAAACCCACAGGAAAAATATTCATGAAGATGCTTATATCCATATATGTGATATATGTGCCAAAGTATTTCGAAGTAAACATGTATTCGAACACCATCATCAAACGGTACACGAGAAGATAGTTATGCCAAAAGTACAATGCCAGATCTGTGGGGCTTGGTTGAaagacaaatatattttgaaccaGCACATGAAGCGACATGATGAGAGCAAGATTGCATGCGATATATGTAGCAAAGAATATTTAAATCGTAGCTCATTAAGAAAACATATCCGTTCGGTGCATTCCGATAAAGTTTACGAGTGTAGCTTGTGCGAAAAAACTTTTAAGAAATCGATTAGTTTGAAAGAGCATTTGGCAACGCATAGGGGAGAAACCTTGTACACATGTCCATACTGTCCAAAAACGTTTAATTCTTCTGGGAATATGtattcacacaaaaaaaagtatcaTCCGAAAGAGTGGAAGGAGCACGAAAAATTGAAGGCAACTGGTGCTATctaa
- Protein Sequence
- MEIDPSNCRLCLTSSDGQINVFREKSSNQSIASILTQHFWYQINENDSCKTICSTCWTKVEDFHIFHNYVYNIHYECLSKVRVELDDNEGGKSEQDHEDNECKGSEQSFGDNGNDDNEDLSLEDQTKPKVDKKPTTKSKQKNQVFKELKNTFDVTSLVNQTNVNKKPTTKSNRLQARKNTEYQDIVELENRQILEYFKMVCEVCLMEFDKFEHVQAHYRKEHNQQGYLTCCNKKYTKRSLLVDHIQRHINPDAFKCDLCNKIFNNKRGLREHIGRHRSRDERPYKCKECPKSFSKKYSWVRHAYVHKNEENKFICEDCDKPFGTKLLLQTHRKNIHEDAYIHICDICAKVFRSKHVFEHHHQTVHEKIVMPKVQCQICGAWLKDKYILNQHMKRHDESKIACDICSKEYLNRSSLRKHIRSVHSDKVYECSLCEKTFKKSISLKEHLATHRGETLYTCPYCPKTFNSSGNMYSHKKKYHPKEWKEHEKLKATGAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01457846;
- 90% Identity
- iTF_01457846;
- 80% Identity
- -