Tlat029740.2
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- -
- Assembly
- GCA_963932295.1
- Location
- OZ010738.1:124175494-124178085[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.026 3.4 9.4 2.4 3 23 173 194 172 194 0.94 2 17 0.59 76 5.1 0.7 2 17 275 290 274 296 0.81 3 17 9.4 1.2e+03 1.4 0.3 3 23 305 326 304 326 0.90 4 17 0.00028 0.036 15.6 1.9 1 23 332 354 332 354 0.98 5 17 2.7 3.5e+02 3.0 2.6 1 20 360 379 360 382 0.92 6 17 1.9e-05 0.0025 19.3 0.7 1 23 388 410 388 410 0.98 7 17 0.002 0.26 12.9 0.2 1 23 419 442 419 442 0.97 8 17 0.0034 0.44 12.2 5.1 1 23 462 484 462 484 0.97 9 17 0.013 1.7 10.3 1.5 1 23 491 513 491 513 0.96 10 17 1 1.3e+02 4.4 3.4 3 23 531 553 529 553 0.88 11 17 0.00023 0.03 15.9 0.3 2 23 559 581 558 581 0.96 12 17 0.045 5.8 8.7 0.5 1 23 587 612 587 612 0.95 13 17 0.0001 0.013 17.0 0.1 3 23 644 665 642 665 0.95 14 17 0.002 0.26 12.9 0.8 1 23 671 693 671 693 0.98 15 17 1.6e-05 0.0021 19.5 3.8 1 23 699 721 699 721 0.99 16 17 0.00016 0.021 16.3 0.4 1 23 727 751 727 751 0.97 17 17 3.5e-05 0.0045 18.4 2.4 1 23 757 782 757 782 0.97
Sequence Information
- Coding Sequence
- atgaatttatctgttaaaaaattaacttgTGTATGTTGTTctcataaaatttgtaaaactgctcaatatcattttattttcaatggcAATACTACTCAATctgatattcaaaaattaattttcgattgCATTGGCAAAAATGTGacgtgtataaataaaaataagcaagtaATTTGTACTCCATGTCTTCAACAGTTGAATCAAATAAAGGACTTCAAAGAAAAGTGTTTGGATTGTCAAAGTAAAAATGTTGTTGAAGTTGAAGAGCATGATGAACATGAAACTGTTTacattgaaaatgaattagCATCGTGTAgtgataataatagtaatttagaTGTGGAGAGAATGAAGAGTATGGAGTATGTTGAAGAGATATCAGGTGAAGAGTATGAAGTACTCGAAGACTTTCTTGATGAAGATATTAATGTCACTCCACTCAAGTATATGGAACAAATTGAATATGAATCGATTGTTGATATGTTTAAGAATATTCAATTTGATTCCAAAGTGCTATGCAGTATTTGCAATATTTCGCTTAAATCTCACACGAGCCttattaaacatataattgAATGTCATGCCGATTATGATAATGTTGATAGTTTATACTACCCATGCAATGTAAATCCAATGTGCAGCAGTTTTAATTCAATACAAGAGATAAATAATCATATCCTCACAACTCATTATTCAACATCGTGGAACATAAATAATAGTGTGAATTTGAAGTGCCTAACTTGCAACGCTAAGTTTCTAAACAAGATATTTTTTGGCAAACATGTTTGTGCCGAACCAAATCTAGTTGATGTTATTGagttaatatgtaatatatgtgGTGGTGAATTTAAGACACgatcaaaaatcaattttcattttcaatttcatttagaAAATGCTCGGccaaaaatttgtttggtttgtttgattaaatttaataccGACACCGACTTCTACGATCATGTTATGTTTTTTCACGAAACTTCTAATGTTTACGTATGTTCATATTGTGATCAAACGTTTTCATCTAATCAAATGCGGCAAAACCACGAAAAGTCCCATAGTTCTAAACAGAAATATCATTGTCAAATTTGTAATACATTATTTCCTAGCGTGCAAATGCTAAGTGAACACACAACTTGCCACACGAAAACTAAACAGTATAAATGTAATGTGTGTGGTAAATATTTGAATCGCGCATCGCGATTACGGAAACACATCGCATCGCATGAAGTACCAAAATTCAATACGATTTATTCGTGCGAAATTTGTGACCTATCTTATGCGTCCGAAAATCACGCAATGGAACATATTAAAAGCGTACATGATATTGATCATGATGAAGTCAATCAACTGTGTAGCCAAACAATAACCGACCATGTCTTTTGCTGTGAATATTGTTCGAAACTGTATCgaacatcaaaatatttaaacgaacATAGAAAGATACACGATTCCATTATACAACCATATGAATGCCAATACTGTTCGTCTACATATGATAGTTTTAGCAAATTACGAACACATACAATTGCTCATGAAAAACATAGAACTGATCGAAATCAATTTCCTGTACAAAAACTGTTTTTATGCCGTCATAGCTGTGATAAATCGTATCTTCATTGGCCCGATTTATCTCATCACATGAATGCAGTCCATTTAGCAAAGCCTGTGACTTGTGAAATTTGTGACAAAACTTTTCCATATAGATGGAActatttatatcataaaaaaattgaacatacGCGTAAAGTGGTGTTCGTGTGCAACATAAGTGGTTGCACTGCAGAATTTCCACGAAGAAAGGACttcattattcataaaaaacaaaaacattctgAAGCAAAAGTTAAAAAGACGTGTAGAAAATGCAAAACCGTTATAAATCTTGATCAATTGCATGTATGTTACGTGGAAGAAGTTATAAATTGTGAACTATGTggaaaaacatttcaaactgtAAACGCGTTGAAAATTCACATAAAGGTGGTGCACGATCGGGTCATCAACTATAATTGTGAATTCTGTAATCGaggtttttataatatttctgataaaaatattcatCTTCGGATACATACTCAAGAAAAACCATATCAATGTACAACTTGTTCTTACGAATGTCGCACACAATCAACGCTAATAGAACATATGAGAACCCATACAAACGATCGTCCTTATAACTGTCCGTATCCCGGATGTGGTGCTAGTTTTCGACGATCATATgcaatgaaaactcattttaaaatacataccGGTGAACGGAAttttaagtgTACTATTGATGGATGTGTAAAAACATTTAGATCTAAGTCgcaattaaattatcatttaaaaaagaaacatttcaatGACGAACAACGAAGGACCGTAGTTACTGAAGATGCGTTTGAGTTACGAGATGAAAATATTACGATTGTATATGATATTGGTTGTGATCTATcgaatataattgaattttaa
- Protein Sequence
- MNLSVKKLTCVCCSHKICKTAQYHFIFNGNTTQSDIQKLIFDCIGKNVTCINKNKQVICTPCLQQLNQIKDFKEKCLDCQSKNVVEVEEHDEHETVYIENELASCSDNNSNLDVERMKSMEYVEEISGEEYEVLEDFLDEDINVTPLKYMEQIEYESIVDMFKNIQFDSKVLCSICNISLKSHTSLIKHIIECHADYDNVDSLYYPCNVNPMCSSFNSIQEINNHILTTHYSTSWNINNSVNLKCLTCNAKFLNKIFFGKHVCAEPNLVDVIELICNICGGEFKTRSKINFHFQFHLENARPKICLVCLIKFNTDTDFYDHVMFFHETSNVYVCSYCDQTFSSNQMRQNHEKSHSSKQKYHCQICNTLFPSVQMLSEHTTCHTKTKQYKCNVCGKYLNRASRLRKHIASHEVPKFNTIYSCEICDLSYASENHAMEHIKSVHDIDHDEVNQLCSQTITDHVFCCEYCSKLYRTSKYLNEHRKIHDSIIQPYECQYCSSTYDSFSKLRTHTIAHEKHRTDRNQFPVQKLFLCRHSCDKSYLHWPDLSHHMNAVHLAKPVTCEICDKTFPYRWNYLYHKKIEHTRKVVFVCNISGCTAEFPRRKDFIIHKKQKHSEAKVKKTCRKCKTVINLDQLHVCYVEEVINCELCGKTFQTVNALKIHIKVVHDRVINYNCEFCNRGFYNISDKNIHLRIHTQEKPYQCTTCSYECRTQSTLIEHMRTHTNDRPYNCPYPGCGASFRRSYAMKTHFKIHTGERNFKCTIDGCVKTFRSKSQLNYHLKKKHFNDEQRRTVVTEDAFELRDENITIVYDIGCDLSNIIEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -