Tlat012454.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- prdm10
- Assembly
- GCA_963932295.1
- Location
- OZ010736.1:195940060-195942486[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00017 0.021 16.3 0.6 2 23 142 164 141 164 0.95 2 11 1.5e-05 0.0019 19.6 2.8 1 23 187 209 187 209 0.98 3 11 0.0077 1 11.1 0.8 1 23 261 283 261 283 0.98 4 11 0.007 0.9 11.2 0.8 1 23 291 313 291 313 0.97 5 11 5.9e-05 0.0076 17.7 2.5 1 23 320 342 320 342 0.98 6 11 0.0064 0.83 11.3 1.1 1 23 349 372 349 372 0.94 7 11 7.1e-06 0.00091 20.6 2.9 1 23 377 399 377 399 0.97 8 11 4.1e-06 0.00054 21.3 2.7 1 23 405 428 405 428 0.98 9 11 0.00038 0.049 15.2 1.6 1 23 515 538 515 538 0.97 10 11 0.012 1.6 10.4 5.6 1 23 560 583 560 583 0.96 11 11 0.0081 1 11.0 3.5 3 23 620 641 618 641 0.95
Sequence Information
- Coding Sequence
- ATGTTAGTTTCTCTGTTTACAGAATATACTGTGTACTCGAAAAAGGACATTCCACTGCGCACAAAATTTGGGCCATTCGAAGGCGATTTACGTAATACAAATGAAAGTGATCTGGACAAGTTAAAATGTGAGAGACTCATATACCCTATGCTATTTATTGGAGACAAATGTTTAGATGTGTCAAATGAAAataCCTCAAATTGGATGAGATTTGTTCGTTTTGCTGAGTCGTATGTGCAGCAAAATCTTTTACTATTCGAATCGGATGAAAAACTGTATTTCAAGAGTTCCCAATTTATTCGGGCTAAACAAGAGTTGCGTGTAGGTTATAGTCGCGAGTATGCTGAAAAATATCAGCTGCCAGTACTTAAATCTGATGATCATATCAATGGTTGTGAGATTGATAATAGTTCGGATTATTGGCGCTGTTTTGAATgtgataacaaatttaaaagttcCGATGATCTACAAATACATTTAAGTCGGGAACATGAAACTGATGTAGTTAGTAAACTTCCACGACGCAAGCGGCATATAAAACGCAAAGGTTCGTCAAGATATTCTTGTCCTGTTTGtagtaaaacattttttaaaaatgttaattttcgaCGTCATTTAAAAAACCATTCTGGCAATCCACTCCTAGAAAAACATTTATCTGATTCAGATAGTAATAAATTAGTAAGTAAAAATATCAGTACATCGATGAAAAAAAGTAGTAATAAGGCGAAGGCTATTAGAGTGAAGAAGTTAAATGTCAAGGATAAAGAAAACAATCAGTTTAAATGTGGTTTATGTTCAAAATCGTTTTTAAACGACGAACGATTAAAGCGGCATGTTATGGTTCACGGGCCTAGTGAACTAAAACCATATCAATGTTCTCATTGTTCAAAACGATTTCTGAATGGATCTGCAATGGCAGCTCACGTTAAGATTcatttgtttggaaaattttattttcaatgtcaACTGTGTAGTGAACGTTTTAAACATAATTCGGAGTTTATGGCTCATGTTAAAATACATATGATCGATAATTCGTATTATTTgtgtaaattttgtaataaaaagttTCCCGAATATGTATTAATTCGAAAACACATTAGAGCGTTTCATCCCGCTGTTAAACATCCATGTACGCTGtgtgataaaaaattttctaatactGATAAATTACGTATGCACATGTTAACACATTCGGATAAAAAAGAATTTACATGTACCGTATGTAGCAAGCAGTTTAAGCGAAAGGATAAATTAAAAGATCATATTAAAAGAATTCACTCAAAATCAACAGTAACAAAATGTGTTGAATCAGCGGGAACCGaggaaaatagaaatttaatgaGTGAATTAATATATGCTGATGGTAATAAATTTGAGAATAATGATGGATTGTCAGAATTTAATAATGATGAAGCTGGTGCAGCGAATTTTGTCGATGATAGGATGATGAACGAGGATGATAAgcaaaagtataataaaaagaagaaaactaaatttttaccAAAGGTGTCTCCAAATGATTATCAACGTTTTATTTATAAGTGTCATGATTGTTTGTTAGgtTTCAAACGTCGTGGAATGTTAGTGAATCATTTAGCAAAACGACATCCAGATATTCCTATCGATTCAGTTCCCGAATTAAATCTTCCAATACTGAAggcacaaaaatttttttactgtcaGTATTGCAACAAAGTTTATCGTAGTAGTGGTAAACGAAAgtatcatattttaaaatgtcatccCGGTGCCGAGTTGCCAATGTCGGGAAGACAAAAAGGAGGAAGTGATAATAATGAATTTCCCACTTATTCGGAAACAGTTTCAACCATTACTACTCATCCACATCTCTGTGATTGGTGTCACAAGCAATATGCTTCAAAACCTAAATTAGTGGAACATCAACGGAAGAAACATGCTGATAAATTAGAGAAAATGAATTCAAAAGTAGTAAAAAATTCTAATTGTTATCCAGCTACTGTGGAAACCCATCATATTATTGAGAATGGatataaagaaaatacaatTGATAAATATCACCCGAACGGTGTTAATTATGATATTAATTCGACTACTCATTATAATGGCAGTTTAATTCACGAACCATCTAAAACTTCAGATAATTCTTCCATACTTCAATCTGATTATCCAACCATATTCGATGATATGGactatataaatttaagaacTGTTAGTACCAGTGTATCTCCAACTTCAACCGCATGTTTAatggaaaatagtaaaaaaattacaacttaTTGTTATTCCGAAAATGGCGGATGA
- Protein Sequence
- MLVSLFTEYTVYSKKDIPLRTKFGPFEGDLRNTNESDLDKLKCERLIYPMLFIGDKCLDVSNENTSNWMRFVRFAESYVQQNLLLFESDEKLYFKSSQFIRAKQELRVGYSREYAEKYQLPVLKSDDHINGCEIDNSSDYWRCFECDNKFKSSDDLQIHLSREHETDVVSKLPRRKRHIKRKGSSRYSCPVCSKTFFKNVNFRRHLKNHSGNPLLEKHLSDSDSNKLVSKNISTSMKKSSNKAKAIRVKKLNVKDKENNQFKCGLCSKSFLNDERLKRHVMVHGPSELKPYQCSHCSKRFLNGSAMAAHVKIHLFGKFYFQCQLCSERFKHNSEFMAHVKIHMIDNSYYLCKFCNKKFPEYVLIRKHIRAFHPAVKHPCTLCDKKFSNTDKLRMHMLTHSDKKEFTCTVCSKQFKRKDKLKDHIKRIHSKSTVTKCVESAGTEENRNLMSELIYADGNKFENNDGLSEFNNDEAGAANFVDDRMMNEDDKQKYNKKKKTKFLPKVSPNDYQRFIYKCHDCLLGFKRRGMLVNHLAKRHPDIPIDSVPELNLPILKAQKFFYCQYCNKVYRSSGKRKYHILKCHPGAELPMSGRQKGGSDNNEFPTYSETVSTITTHPHLCDWCHKQYASKPKLVEHQRKKHADKLEKMNSKVVKNSNCYPATVETHHIIENGYKENTIDKYHPNGVNYDINSTTHYNGSLIHEPSKTSDNSSILQSDYPTIFDDMDYINLRTVSTSVSPTSTACLMENSKKITTYCYSENGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01458909;
- 90% Identity
- -
- 80% Identity
- -