Tlat010898.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tipula lateralis
Gene Symbol
-
Assembly
GCA_963932295.1
Location
OZ010736.1:161254550-161257296[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0023 0.3 12.7 2.7 2 23 65 86 64 86 0.97
2 16 0.0002 0.026 16.0 1.1 1 23 92 115 92 115 0.95
3 16 0.006 0.78 11.4 0.4 1 22 144 165 144 165 0.96
4 16 0.071 9.2 8.0 0.7 1 23 173 195 173 195 0.97
5 16 0.00053 0.068 14.7 1.5 3 23 203 223 201 223 0.96
6 16 4.3e-05 0.0056 18.1 0.7 1 23 229 251 229 251 0.96
7 16 0.41 53 5.6 0.3 1 21 257 277 257 278 0.94
8 16 0.012 1.6 10.4 0.9 1 23 538 561 538 561 0.96
9 16 0.00053 0.068 14.7 0.1 1 23 589 612 589 612 0.95
10 16 0.011 1.4 10.6 2.5 1 23 648 671 648 671 0.94
11 16 0.36 46 5.8 0.7 1 23 674 696 674 697 0.94
12 16 0.0023 0.29 12.7 0.2 2 22 709 729 708 729 0.95
13 16 0.00022 0.029 15.9 2.5 1 23 737 759 737 759 0.97
14 16 1.5e-05 0.0019 19.6 2.8 1 23 765 787 765 787 0.98
15 16 2.7e-05 0.0035 18.8 0.6 1 23 793 815 793 815 0.99
16 16 0.32 42 6.0 1.5 6 23 826 843 822 843 0.98

Sequence Information

Coding Sequence
ATGACGAATAGTGAAAAGGATTCGAGTGATTTggatgaaaaaccaaatttcGTATTCGAAGGGAATAAATATTGTTGCCTGTATTGTGGCAATAAATATTTGAGCCGAACGCGCTGTGAAGTTCATGTCCGATTTTGTGACGATAAAGATGATTCGTTGGCATTCACTGAGGTTAATGGAGTTCCAAAGATTGAGTGCAAAGTATGCAGTCGACGTTTCAAACATTTGGTTGGCATGAAAAGGCACGCCAAGAAGCATAATTTGCCCGGTGGATTTATATGCAGTACTTGTGGCAAACGGTTTACAAGTGAATCGTCCAGGGGTAAACATCAGAGAGACGAACATAAAAATGATAAGCAATGCAAAATAGTGAAACTCGATACTTCTAATTCAATTACCAGTGAAAGTGATAGTAGTCCATCTGAATCATTTCGTTGTGATGATTGTGGCGGGATTTTTCGTAAACAAACTGTTTATCAAACTCACTTGAAAACTAAATGTGGCACCGAAAAAGAATTCGTGTGTGATATGTGTTCCGCAAAATTCCTCACCAAGAATACACTGTATGCCCATAAACAAATCCATGTAGGTGTGAAACGGCACTTGTGTGACTATTGTGGAACGAGTTTTTTAAGTAAAGGCCAGCTCAAGGTTCATGAACGTTCACACACGGGTGAAAAGCCGTTCAAGTGCGAAATCTGTAATAAGGGTTTCTCGTATCGAGAGAGTCTGGTAACCCATTCATCAATACACACTGGAATTAAACCGTATGCATGTCAAGCATGTGATTTACGTTTTTCATGTATTgggaatttaataaaacatcgAAGAGCTCGACCCGATACTTGTGGTCTGGCTAAGtatcaacaaaactataaaatagcaCCCAGGGCGACCACAAAAATGAAACACAGCTTAGATGAATCGATTATTATTAAGCAGGAACGTAAGACCGATCAAAGCACCGAGTCCCCAGTTCGTTCACCAATAGCACCAACGCCTGCATTTGAAAATCCACCGACAATCAAAAAGTTTTCCGAAACCACTATAACCGATCAGAAACCAATCTTATATCGAATTACAGAAATAACCCCGGTCGATTCGCAAATAATAGATTTGAATAATGTCGATGAGATTCGTTCGTTAAAGgatgaaaatattattgtaactATGGAGGAAGATCAAGGAGAAGCTGATGCTTCGATGGACGATATTGATGATGAGGCATCCGATTCACAACAAGAAGAAGCGAACGAAGATTATCTACCGGGTGTGCCATCGGAAGAGCATAATGGCGGCGATGAGGAAGATTATGTGCATTCGGATTGGTACGATAAGCCCGACGATATCCAGTATGTTGAACATGGCACCAGCACAGAGGAGAACTACGTTCTCGAAATCGAGTTACAAAATAACGAACAACCTAATTCTATTTATACCATAATCGAAAACACGGACGATAACGAATGTGAAACGTTCATCATTCACACGGCACCCCAAAAGCAGACGAGAAACGATGTTATGATAAAATATGAGAAAAATGATTCTGGGTCTGAACGCCAAGAGGAGGAAATCCCTCCAGAAATTGAGGCCAGTAGTCCGCCACCGCTCTACAAATGCACTTTCTGTCCTCAACTGTACATACAGCAAAATCGATTAAGGAATCATCTAACTGTCGATCATGCTCAAGCTGATCGCGAGCCACACAATCAAGAGGCAGAAAATAGTAATGTAGGCAAATCCGATGGAAGTTCGAAAGAAGAATATAAATGCCCGTTATGcccaaaaatatacatacagcCGATCAGGTTAAAAAATCATCTCGTAATTGAGCATTCAGCAAAAGACGGATTTGCGTGTCAATATTGTTACAAATGGTGCGATTCGGAAGACGAGCGAATAACACATCAAGCGTGCCATGGCGCAGATGGTTCACTCATCCACAAATGCAATTGGTGCAAATTGTATTTTGCGTCACTCGACGATCTAGAGACGCATCATAGCCAAATTCACTTTTGTTTTCGGTGTTCAAAATGTTCGGTCGAACTCGACTCAATAGACGCCCTAAAAACTCATACTGACGAACACCATAAACCGCGAGTATCTGGTTCGCCAAAAAGTTTAAAGTGCGAATCATGCGATCGTTTATTTTCGACAAAAGTAGCCCTATCCGATCATCAGAGGTCGAACTGCGGTCGAGCACCACTCTACAAGTGTGATATATGTACGAAGAGCTATCACAGTGCTGGAAGTCTGAAAACGCACAAAACCGTACACAGCGGTGTGCTACCGTTTCAGTGTAAATATTGCGAGAAAAGGTTTCGAACTAAAGGACAGGTTAAGGTGCACGAACGCCAACACAATGGCGAAAAACCATACAAGTGTGCTTGGTGCCCCAAAACATTCGGATACCGCGAAAGCCTGTTAACTCACCAATCGACACACACGGGACACAAACGATTTATGTGCATCCCGTGTGGAACACGATTTTCCTGCATCTCTAATTTACAATCGCATCGAAAATCTCATAAACTGACATGTGGCCAGCATCCAAATGTAACAAAACCAATCAGTGCTAGTGTGTCAGACAATGAAGATATAAAAGTGCagattgaataa
Protein Sequence
MTNSEKDSSDLDEKPNFVFEGNKYCCLYCGNKYLSRTRCEVHVRFCDDKDDSLAFTEVNGVPKIECKVCSRRFKHLVGMKRHAKKHNLPGGFICSTCGKRFTSESSRGKHQRDEHKNDKQCKIVKLDTSNSITSESDSSPSESFRCDDCGGIFRKQTVYQTHLKTKCGTEKEFVCDMCSAKFLTKNTLYAHKQIHVGVKRHLCDYCGTSFLSKGQLKVHERSHTGEKPFKCEICNKGFSYRESLVTHSSIHTGIKPYACQACDLRFSCIGNLIKHRRARPDTCGLAKYQQNYKIAPRATTKMKHSLDESIIIKQERKTDQSTESPVRSPIAPTPAFENPPTIKKFSETTITDQKPILYRITEITPVDSQIIDLNNVDEIRSLKDENIIVTMEEDQGEADASMDDIDDEASDSQQEEANEDYLPGVPSEEHNGGDEEDYVHSDWYDKPDDIQYVEHGTSTEENYVLEIELQNNEQPNSIYTIIENTDDNECETFIIHTAPQKQTRNDVMIKYEKNDSGSERQEEEIPPEIEASSPPPLYKCTFCPQLYIQQNRLRNHLTVDHAQADREPHNQEAENSNVGKSDGSSKEEYKCPLCPKIYIQPIRLKNHLVIEHSAKDGFACQYCYKWCDSEDERITHQACHGADGSLIHKCNWCKLYFASLDDLETHHSQIHFCFRCSKCSVELDSIDALKTHTDEHHKPRVSGSPKSLKCESCDRLFSTKVALSDHQRSNCGRAPLYKCDICTKSYHSAGSLKTHKTVHSGVLPFQCKYCEKRFRTKGQVKVHERQHNGEKPYKCAWCPKTFGYRESLLTHQSTHTGHKRFMCIPCGTRFSCISNLQSHRKSHKLTCGQHPNVTKPISASVSDNEDIKVQIE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-