Tlat013281.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- -
- Assembly
- GCA_963932295.1
- Location
- OZ010737.1:13976606-13977897[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 7.3e-05 0.0095 17.4 1.1 1 23 146 168 146 168 0.98 2 9 5.2e-05 0.0067 17.9 0.2 2 23 175 197 175 197 0.95 3 9 0.00077 0.099 14.2 0.3 1 23 204 229 204 229 0.95 4 9 2.1e-05 0.0027 19.1 0.3 1 23 241 263 241 263 0.94 5 9 1.3e-05 0.0017 19.7 4.1 1 23 269 291 269 291 0.99 6 9 0.0015 0.19 13.3 1.1 1 23 297 319 297 319 0.97 7 9 0.0025 0.32 12.6 0.2 1 23 325 348 325 348 0.97 8 9 3.2e-05 0.0041 18.6 4.5 1 23 354 376 354 376 0.98 9 9 4.4e-06 0.00057 21.3 0.4 3 23 384 404 383 404 0.99
Sequence Information
- Coding Sequence
- ATGAGTTTAATATTCGATAGAAGTAATAAGGAAATTGCcgaaatgttttgtaaatacaCTTCGATTGAGATTGATTGCAACGATGAAATGCCTCAAGAAATATGTACTGAGTGTCTGCATACAATTATTCAGTTCCATGAGTTTTGTGTGATGTGTGTGAAATCGGATACACTGTTTCGGCAAGAAAAACATCTGAGGAGTATGATaaaagtacaaaataatttcgattCTCAAACTAACGTAATGGATGTTGAACCAGACCTTATGAAGTTTGAAGCAGTGAAACAAGAAATTAATTGTGGATTAAATCGGTTAGATGGCGAAGATGAACATTCAGTCGaggaagatgatgatgatgaatcaGATTCAAACGAACTAACCGAAGAAGAactatttaaaagtaaaacagGTGAATCTACAGCCAAAACTAGTATATTTCCGTGTCCTCAGTGTAACAAAAAGTTTTATCGTGAACGTCGACTGGAAGGTCATTTGAGACAACATCAAGGACTTAAACCAGCCGTGTGTACTATTTGTAATAAAGAATTTTCTAAATGGACCGCGCTTGACACACATATTATGTATTCACATAACAACGCTGAACGAAAATACATCTGTGATGAACCGGACTGTGAAAAATCCTATATTATGAAACAATCGTTGACCACACATAAAAAACGGGCTCACTCAAAAACACTTGACATAAAACCTGAATCATGCTATATATGCGAATTGTGTGGTAAGTCTTTCGCTACGATAGCTACGTTAAAGAAACACTCATTTATACATAGTGGACAGAGACCATTCAAATGCACATTGTGTCCGAAGAAGTACATTACCAACCATAAACTCAAAGAACATATGATGAGACATGAGGgtatcaaaaattttgtttgcccCGTGTGCGGTATGAAAAAGACTACAATGCACGAACTAAAAATTCACATGAATTATCATACGCGTGAGAAGTTGTATCCTTGTAAATCATGTACAGCAGTGTTCTCGAGTCCGGGTAATCGTGGCCGTCACTATAAAATTGTTCACTGTGGGATTAAAGCATATCATTGTACGTATTGCGACCGATCCTTTGGTAAGGCTGAAACGCTTAAGCATCATGTGATGACACATACAGGAGAAAAGCCGCATGGATGTACGCTGTGTGGTAAGCGATTTATTCAACTCATCGCATTACAAACTCACATGAAAACGCATAATAAATCTCGTTAG
- Protein Sequence
- MSLIFDRSNKEIAEMFCKYTSIEIDCNDEMPQEICTECLHTIIQFHEFCVMCVKSDTLFRQEKHLRSMIKVQNNFDSQTNVMDVEPDLMKFEAVKQEINCGLNRLDGEDEHSVEEDDDDESDSNELTEEELFKSKTGESTAKTSIFPCPQCNKKFYRERRLEGHLRQHQGLKPAVCTICNKEFSKWTALDTHIMYSHNNAERKYICDEPDCEKSYIMKQSLTTHKKRAHSKTLDIKPESCYICELCGKSFATIATLKKHSFIHSGQRPFKCTLCPKKYITNHKLKEHMMRHEGIKNFVCPVCGMKKTTMHELKIHMNYHTREKLYPCKSCTAVFSSPGNRGRHYKIVHCGIKAYHCTYCDRSFGKAETLKHHVMTHTGEKPHGCTLCGKRFIQLIALQTHMKTHNKSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -