Tlat025160.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- grau
- Assembly
- GCA_963932295.1
- Location
- OZ010738.1:32755124-32757833[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0033 0.43 12.2 1.0 6 23 174 191 174 191 0.97 2 17 3.1e-07 4e-05 24.9 2.9 1 23 197 219 197 219 0.98 3 17 0.0056 0.73 11.5 1.8 1 23 227 249 227 249 0.98 4 17 0.00013 0.017 16.6 0.3 1 23 257 279 257 279 0.97 5 17 4.5e-06 0.00058 21.2 0.3 1 23 285 308 285 308 0.96 6 17 0.0058 0.75 11.5 4.9 2 23 317 338 316 338 0.97 7 17 0.0048 0.62 11.7 3.8 1 23 344 367 344 367 0.94 8 17 3.5e-06 0.00045 21.6 0.9 1 23 373 395 373 395 0.98 9 17 0.0019 0.24 13.0 4.2 1 21 401 421 401 422 0.95 10 17 0.2 26 6.6 0.4 2 23 530 552 529 552 0.95 11 17 2.9 3.8e+02 2.9 1.4 6 23 561 578 561 578 0.94 12 17 4.7e-05 0.0061 18.0 0.2 1 23 584 606 584 606 0.98 13 17 0.00047 0.06 14.9 6.4 1 23 614 636 614 636 0.97 14 17 0.0028 0.36 12.4 0.1 1 23 644 667 644 667 0.98 15 17 0.0035 0.45 12.2 0.6 3 23 675 696 674 696 0.96 16 17 1.4 1.8e+02 4.0 2.0 2 23 704 725 703 725 0.95 17 17 0.003 0.39 12.3 0.3 1 23 732 755 732 755 0.94
Sequence Information
- Coding Sequence
- ATGTCAAATCaagatatattgaaaaaaagGTATTTGAAGATTGTTTTAGAATTGGACGAGAAACAATCGGAGGTTAAAACAGAATGGGATGTAGATGAAGATTCATCCGGTTCGTGTGATGTAGTTTCATCCTGCCCATTGCAAGAAGATGACAGAGTTCGCGAGTTTTATGACCTAAAATGCTGTcaatgtttaaataattcattcgGAACCTTCGAACTACTCCAAGATCACTTCGAACGTAATCACAAAAGTAAAGGGTATTTGACCTGCTGTGACACCAAACTATACACTAAAACTGTATTGCTCGATCATATCatacaacacaataaattattaaatgttgaAATCAAACAAAAGACAAGATTGAAAAGAGCACGGCCAAATCATGATCAAAAAATTCGGGAATTTTTCAGTCTCAAATGTAATTTATGCGCAGACTATCAACTGTTTGCGTCATTTAAACAGCTCCAGGATCATTACACATTGTTGCACAAGTCTCGCGGGTATGTCGAATGTTGCGACAAAAAGTTCTATCGAAAAGAGCATCTCATCGATCACATAACGAATCACATCAATCCAAGTGCGCACAAATGTCCAGAATGTGGCAAAATGAGTAAATCAAAAAGTTCGCTTAAGGTGCACATGAAGCGACATATTCCAGTCGAGGATCGACCATATCAATGTTGCGTGTGCCCAGCTCGATACTCAACCAAAACTTTGGTCACCAAACACGAGCTCTCCCATTTATCAGACaatgagaaaaaatttacatgCAACCTGTGCGACAAAGCGTTTGCAATTAAATCTGTCCTCGAGAAGCACAAGTTGATTCATTCGTCCGAGCATAAatttgtgtgcgaaaattgtgGCCGATTGTTTAATTCGAAAGGCAATCTCCAGCTGCACATGAACAATATACACAATAATGATCCGCGGCCCAAACTCCAGTGTCATATTTGCCAGTCgtggtttaaaaataatgatacgCTTCGGAAACATATTCGCCATCATACCGAGCAGCATGACCACAAGTGTGATCAATGCGAAAAAGtgttttcatcgaaaaatctaCTCTGGTGCCATGTGCGCTATGTGCACACGCAAATCAGGAAGTATAGCTGCAGTATATGTGAACGAACGTTTCGACGGAAGTTGGAACTGACCGAACATATGGCTAGACATGCTGGGAAGTCGTTGTACGAGTGCCAAAAGTGTTCCAAATCGTTTATGTACAGTTCTCATTTTTCCCAGCATCGCAAGAATTGTCAGGTAAAGCTCGACAATAATTATGAAAAGTCAATTTGCACAACGTGCTGGTGGAAAGTAGAGAACTTCCATGTATTCTACAAACACGTTCAAGAGAACCATACCCATTTCTATGATCGGATTGATGAACCTCATGCcgaaattaaatttgaagatgaatttgATTTGTTCGAAATCGTAAACGAGTCAGAAGTTATCGAAACCCATCAAGATAGTGATTCATCCGAACCACCGCTCGGAAAACGACGCCGAGAGCCGCACAAATCGCCAACCCAAGTACTGGAGGAggatgaaaaaatcaaaaaatatttcaaattagaaTGCAACATATGCTCGTCGAAATTCAACGAGTATACTGAACTCCGTCCCCACTATCGTAGTGAACACCAACAGGATGGATATTTAGTGTgctgtaataaaaaatttcgtcACAAAGTACGTATGTTAGAGCACGTTGAGCAACACATAAATCCGGATACATTTAAATGCGAAACATGCAATAAGGTGTTCGTTAGCAAGCCCGGACTCTTGGATCATCTCGACAGTCATATACCGGAATCGGAGCGAAAACACAAATGTCCAAATTGTTGCAAAACTTTTGTCCGAAAATATCAATTGAACCAACACATGATCTATCACACATCTAACGAAGACAAACGTTTTAAATGCGATCAATGTCCATATGTGGCGGCCACCAATTCAATACTTCAATCGCATATACGTAAGGTGCACGAGGGTTCGGACGAAGTATTGTGCAACGTTTGTGCCAAACCGTTTcgtagtaaatatttttttcaagctCATTTCGAGACCGAGCATACCGATGCTCAGACTAAGGTTCAATGTCAGCTGTGTAAAATGTGGTTGAAACATGAACGGAGTCTTCGTAGTCATATGGTTCGGCATAGTGATtcgaataaacaatttttttgtgatatttgtgGTAAACAAGCTCCTAATCGGAACGCCCTTAGTCGACATAAACAATATGCTCATACGAAACAGACAAGTTCATGTGcgacaaataaatcaaataattctgcaattatataa
- Protein Sequence
- MSNQDILKKRYLKIVLELDEKQSEVKTEWDVDEDSSGSCDVVSSCPLQEDDRVREFYDLKCCQCLNNSFGTFELLQDHFERNHKSKGYLTCCDTKLYTKTVLLDHIIQHNKLLNVEIKQKTRLKRARPNHDQKIREFFSLKCNLCADYQLFASFKQLQDHYTLLHKSRGYVECCDKKFYRKEHLIDHITNHINPSAHKCPECGKMSKSKSSLKVHMKRHIPVEDRPYQCCVCPARYSTKTLVTKHELSHLSDNEKKFTCNLCDKAFAIKSVLEKHKLIHSSEHKFVCENCGRLFNSKGNLQLHMNNIHNNDPRPKLQCHICQSWFKNNDTLRKHIRHHTEQHDHKCDQCEKVFSSKNLLWCHVRYVHTQIRKYSCSICERTFRRKLELTEHMARHAGKSLYECQKCSKSFMYSSHFSQHRKNCQVKLDNNYEKSICTTCWWKVENFHVFYKHVQENHTHFYDRIDEPHAEIKFEDEFDLFEIVNESEVIETHQDSDSSEPPLGKRRREPHKSPTQVLEEDEKIKKYFKLECNICSSKFNEYTELRPHYRSEHQQDGYLVCCNKKFRHKVRMLEHVEQHINPDTFKCETCNKVFVSKPGLLDHLDSHIPESERKHKCPNCCKTFVRKYQLNQHMIYHTSNEDKRFKCDQCPYVAATNSILQSHIRKVHEGSDEVLCNVCAKPFRSKYFFQAHFETEHTDAQTKVQCQLCKMWLKHERSLRSHMVRHSDSNKQFFCDICGKQAPNRNALSRHKQYAHTKQTSSCATNKSNNSAII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -