Tlat022786.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- -
- Assembly
- GCA_963932295.1
- Location
- OZ010737.1:189006891-189008594[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.9 8.9e+02 1.8 0.3 3 17 51 65 49 66 0.90 2 13 0.17 22 6.8 1.3 2 20 84 102 83 103 0.93 3 13 0.016 2.1 10.0 1.7 1 23 205 228 205 228 0.96 4 13 7.5e-07 9.7e-05 23.7 1.7 1 23 234 256 234 256 0.98 5 13 0.011 1.5 10.5 4.4 1 23 262 284 262 284 0.98 6 13 4.7e-07 6.1e-05 24.3 1.1 1 23 290 313 290 313 0.95 7 13 0.00011 0.014 16.9 0.3 3 23 328 348 327 348 0.96 8 13 0.24 32 6.3 4.1 2 23 355 376 354 376 0.96 9 13 3.6e-07 4.6e-05 24.7 0.6 1 23 382 404 382 404 0.96 10 13 0.00077 0.099 14.2 3.4 1 23 410 432 410 432 0.96 11 13 1.6e-05 0.002 19.5 1.3 3 23 440 460 438 460 0.96 12 13 1.7e-06 0.00021 22.6 2.6 1 23 466 488 466 488 0.99 13 13 2.8e-05 0.0037 18.7 4.6 1 23 493 516 493 516 0.98
Sequence Information
- Coding Sequence
- ATGGATTTGATCTGTCGAACCTGTTTAAATAAATCGGATAATATGAAACCGATATTTTTAGTCGATGAAAATGGGAAGTGTATATCTAAAATATTTGAGTCATGTTTCGGATTAAATATTCAACAACTGGCCGGATTTCCAACCAGCATATGTTCAGGCTGCTTAAAGAAAGTAAATAGTTCGTATCAGTTTCGACAACAATGTGAAATATCTTATAATGTGTTGTTGGATAGTATGGACGCTAATATGAAATGTAGACTCTGTTCAAAACAGTATACATTGCTGACGCATCTTCAGGAGCATTACACGTGTGATCACCCAGATGAGATATATGAAATCCGACTGGTTGATACCAATTTATTAAACACTAacgaaaatgtaaataaattaccCAAGGTAGAAAAATCAATAATGAGTGAAATTAAAATGGAATATTTCGAGGAAAAATTCACCATCAGTGAGCCAGAATCATTAGacgatgaaaataatttgtttaatgttgGAACAAAATACGAAACTGAACGAGAAAGTGGCCCGCTAGAGGATCCGATTCGGGATGCAACCGACCTtcgaacaaatttattaaatgacaCTGATAAGCAAGATGAACCCTTTAGTTGTACTCTTTGTACATTAACGTTCGAACAGGAAATTGACTATCATCAACATATAGAATCAAAGcacaataatataaaagtacATCAATGTGATCTGTGTGACAAAAAATTTTCCCGGCCTAAACTTCTACAAATCCACCAAGCTACTCATTTAGATGTGAAATATTATCCATGTGAAAAATGTGATAAACGATTCTACTGTTTAGAGAACAAAACCCGTCATATGCAACAACATACAAACAACAAACCATATAAATGTACCGAATGTGATACTGGATTCACAAGAGCGGATAATCTACGAAGGCATCGAGAAAATCGACACACTAAACGAAATAATAAGCCTGCACCACCGAAAACCGAAATCTGCGATATTTGTCAAAAAGCGTTTACAACTCCAAAAAACCTCCTCTTTCACATGAAAGCACATCGAACCGTTATTGATTGGACATGTAAATTCTGTCAGCTAAAGTTTAACACGAAGCAAGAGCACAATGATCatcaaaaaatacatattaaagAGCGACCGTTTCTTTGTTCTGAGTGCGGTTTGCGATTTAGTCGTAACGATTATCTGATTGTCCATATGCGACGTCACAAAGGCGAGAAaccatttaaatgtaaattctgTAATAAAGGATTTCCTCGATCGAGTGATGTAACCATGCACGAACATTATCATACAggagaaaaaaaacatttgtgtaCAACATGCGGTAAAGGATTTCAACGTGCCTATAATTTATTGGTGCACACACGAGTGCACACTGGTGAACGGCCTTATAAATGTTTACATTGTGATAAAAGTTTTACCCAAGGTAATGATCTTAAGGCACACGTTCGGCGTCACACAGGCGAATTATTCAAATGTGATATATGTACGGAAGGCTTTGTCCATCTCTATCATTTAACACAACACCAACGTAAACAGCACGGAATCGATAACAAATCGCGTATAGGACGAGTTGAGAAATTTATAAAGCCTACAACTACAGCCACAAATCTTGTTAatgagaaataa
- Protein Sequence
- MDLICRTCLNKSDNMKPIFLVDENGKCISKIFESCFGLNIQQLAGFPTSICSGCLKKVNSSYQFRQQCEISYNVLLDSMDANMKCRLCSKQYTLLTHLQEHYTCDHPDEIYEIRLVDTNLLNTNENVNKLPKVEKSIMSEIKMEYFEEKFTISEPESLDDENNLFNVGTKYETERESGPLEDPIRDATDLRTNLLNDTDKQDEPFSCTLCTLTFEQEIDYHQHIESKHNNIKVHQCDLCDKKFSRPKLLQIHQATHLDVKYYPCEKCDKRFYCLENKTRHMQQHTNNKPYKCTECDTGFTRADNLRRHRENRHTKRNNKPAPPKTEICDICQKAFTTPKNLLFHMKAHRTVIDWTCKFCQLKFNTKQEHNDHQKIHIKERPFLCSECGLRFSRNDYLIVHMRRHKGEKPFKCKFCNKGFPRSSDVTMHEHYHTGEKKHLCTTCGKGFQRAYNLLVHTRVHTGERPYKCLHCDKSFTQGNDLKAHVRRHTGELFKCDICTEGFVHLYHLTQHQRKQHGIDNKSRIGRVEKFIKPTTTATNLVNEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -