Tlat031977.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- -
- Assembly
- GCA_963932295.1
- Location
- OZ010738.1:173594493-173599587[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.42 54 5.6 0.0 1 23 98 120 98 120 0.95 2 15 9.6e-05 0.012 17.1 2.7 2 23 125 146 124 146 0.96 3 15 0.00011 0.015 16.8 1.3 1 23 208 230 208 230 0.98 4 15 7.1e-05 0.0091 17.5 0.9 2 23 235 256 234 256 0.95 5 15 5.8e-05 0.0075 17.7 1.6 1 23 261 284 261 284 0.96 6 15 2.5e-05 0.0032 18.9 3.8 1 23 290 312 290 312 0.98 7 15 0.00016 0.02 16.4 5.4 1 21 422 442 422 443 0.97 8 15 0.024 3.1 9.5 1.4 2 23 459 480 458 480 0.97 9 15 5.3e-05 0.0068 17.9 2.1 1 23 486 509 486 509 0.97 10 15 0.014 1.8 10.2 0.6 3 23 521 541 519 541 0.93 11 15 0.0011 0.14 13.8 2.4 1 23 547 569 547 569 0.97 12 15 1.1 1.5e+02 4.2 0.1 13 23 579 589 574 589 0.84 13 15 0.02 2.6 9.7 4.8 1 23 595 618 595 618 0.98 14 15 2.5e-05 0.0033 18.9 0.9 2 23 625 647 624 647 0.96 15 15 4.3e-05 0.0056 18.2 1.6 1 23 653 676 653 676 0.96
Sequence Information
- Coding Sequence
- ATGGGAacttcattaaatgaaaatgatggAAATGTACcaacaaatttatgtttaactTGTCTAGAAAAGCTGTCTAATGCATACGAATTTTTAGAACTATGCAAAAATTCTGAAAAACTGTTGTTAACATACAAAGAAGCTGTGGTCAACGAAAACTCTAGCAAAGTTGAAGCCATTGAGTGTATCTCAGATAATGGATCATTCAACGAATATGAAGCGACTAATATGAAGACCATTCCGATTCCAAGCAgtgataatatttcatttaaatctaacgactgcGAAACACAATATGAATGCATACAGTGTAATGAGATTTTAAGCAGCGCAGTGCAATTAGGAAAGCACGAGAAAATACATGAAGGCCAGTGGAAATGTTCAGAGTGTGACAAAATACTTGCGCATAAGTATTCTTTACGACATCATATGTTATTGCATACGGaaataattgaGTGTAGCGGTTTCTGTTTCGAAGATGTTAATAGCGCATCGAACGATCCTAATACCCATTCAATTTTGTCGAATGATGATTCCTATAGTGATAATGACGATCCCGATTATATTTCTGATAATGCATCGATGGATGAtgatttatcaaaattcaatgaTAAAACTTTACAATACGAATGCATGAAGTGTAATGAGTTTTACAGTAGTGCAACCCAGTTGAAAAAGCATGAAAAGATTCATACGGGAAATTGGAAATGTTCTGAGTGTGATAAAATACTTGCTAATAAGTATTCTTTGCGACATCATATGGTGTTACATACTGGCAAACCACACGAGTGTAATGTTTGCAAAAAAAGATTTGCTGTGGTTTCTGAACTAACAcgacatacaaaaatttatcataaaaatggaaaatcgtaCATATGTGATCAATGTCCTAAACGTTACTATACAAAGAGCCATTTGACCAGCCATAAATTGACTCATCTTAATAGAAAACGAGAACAAACGCCGGAAACGGATGATCTTATTTTGAAAATCGAAGATTTGGAATATGATAAAACTGACACGAACAACTTTATTAAATATGAGGCATCAGGATCAAACTCATCGACAGTGAATAACGTTTCGACAGAAGATTATGAAGATACAAACTTCAAAGAATCTATCAAATGTGAAACTGAATCTACATCGCCTattcgaaattttccatttaatacAAGCACAAATGAAGATGGGAGTTTAGATAGTTTTCCTTCGAATGATGTTACAAAAGAAAACTCACCGAAAATAATAGATAATAGTAGTGACTTTTATAGATGTAAAACATGTTTTAAAAAGTTTCGCCataaaagtaattatttaaGCCATATGAAGCTTCAATTAAATTGCAAAGAAGATCTAAACACCAACAATAATCCACAAAAGTGTGATCACTGTGCGACCATATCTGATAATGTGTATCAGTTGCGTAAACATTTAGAAACTCATTTGGATAAGGATCCGTTTAAATGTAAGCTATGcgaaaaaacttataaaacttGGGTAAAGTTAAGCGTACACACACGACAGACTCATTTGACGAAAACTAAATATCGTAAAAGTCATTTGTGTACTCTTTGTGGCCGAGGATTTTTCACTGCAAAACTCTTAGACGAACATTATTTGGCTCATCAAGgtattcgaaaatataaatgCGACAAATGTGATAGTTCTTTCTGCACCGTATATGGTTTAAAACAACACGCTACTATTCATACAAGGGATGCGTTGCAGTGCAGTGAATGTGCTACGTTGAATCGACACATGAAAAGTCATCGGGGCGAACGTAATTATGTATGCGATCGATGTTCGAAACGATATACATGCCGAGGGCATTTAaatgaacatataaaaaaaattcatgaaaatcctACGAAGCTAAAATGTGAGGAATGTGGAAATGAATTTGCTCATCGAAGGGCCCTAAAGAAACACATACGACTTGAACATGCTGagaaaaaagtatttaattgtGATGTGTGTGGGAAAACGTATGGTAGAAAATCGAGgcTAAAGGAACACAAGAAAAAGGTTCATACAACAGCAGTAATCGCAGAACCTGGCCCTACGTCTAATGAAATAGAACAGAATATAGCAATATCATTATCAACATTTAATCAATCGGATACTGGGATTATGGTTGAAATGTTCAAAACTGCTGAATGTTAA
- Protein Sequence
- MGTSLNENDGNVPTNLCLTCLEKLSNAYEFLELCKNSEKLLLTYKEAVVNENSSKVEAIECISDNGSFNEYEATNMKTIPIPSSDNISFKSNDCETQYECIQCNEILSSAVQLGKHEKIHEGQWKCSECDKILAHKYSLRHHMLLHTEIIECSGFCFEDVNSASNDPNTHSILSNDDSYSDNDDPDYISDNASMDDDLSKFNDKTLQYECMKCNEFYSSATQLKKHEKIHTGNWKCSECDKILANKYSLRHHMVLHTGKPHECNVCKKRFAVVSELTRHTKIYHKNGKSYICDQCPKRYYTKSHLTSHKLTHLNRKREQTPETDDLILKIEDLEYDKTDTNNFIKYEASGSNSSTVNNVSTEDYEDTNFKESIKCETESTSPIRNFPFNTSTNEDGSLDSFPSNDVTKENSPKIIDNSSDFYRCKTCFKKFRHKSNYLSHMKLQLNCKEDLNTNNNPQKCDHCATISDNVYQLRKHLETHLDKDPFKCKLCEKTYKTWVKLSVHTRQTHLTKTKYRKSHLCTLCGRGFFTAKLLDEHYLAHQGIRKYKCDKCDSSFCTVYGLKQHATIHTRDALQCSECATLNRHMKSHRGERNYVCDRCSKRYTCRGHLNEHIKKIHENPTKLKCEECGNEFAHRRALKKHIRLEHAEKKVFNCDVCGKTYGRKSRLKEHKKKVHTTAVIAEPGPTSNEIEQNIAISLSTFNQSDTGIMVEMFKTAEC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -