Tlat010369.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- -
- Assembly
- GCA_963932295.1
- Location
- OZ010736.1:151483584-151523884[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 8.4e-05 0.011 17.2 1.4 1 23 435 457 435 457 0.98 2 20 0.077 10 7.9 5.5 1 21 487 507 487 509 0.94 3 20 0.0059 0.76 11.4 2.1 1 23 517 539 517 539 0.96 4 20 0.0019 0.25 13.0 1.3 1 23 671 693 671 693 0.98 5 20 8.4e-05 0.011 17.2 1.4 1 23 753 775 753 775 0.98 6 20 0.009 1.2 10.8 6.5 1 21 805 825 805 827 0.94 7 20 0.038 4.9 8.9 2.1 1 23 835 857 835 857 0.96 8 20 7.4e-05 0.0095 17.4 1.0 1 23 1088 1110 1088 1110 0.98 9 20 8.4e-05 0.011 17.2 1.4 1 23 1181 1203 1181 1203 0.98 10 20 7.4e-05 0.0095 17.4 1.0 1 23 1311 1333 1311 1333 0.98 11 20 8.2e-05 0.011 17.3 0.4 1 23 1404 1426 1404 1426 0.98 12 20 0.65 84 5.0 5.4 1 21 1456 1476 1456 1478 0.93 13 20 0.0002 0.026 16.1 0.8 1 23 1561 1583 1561 1583 0.98 14 20 0.65 84 5.0 5.4 1 21 1613 1633 1613 1635 0.93 15 20 0.00048 0.062 14.9 1.3 1 23 1643 1665 1643 1665 0.93 16 20 0.0061 0.79 11.4 0.1 2 23 1691 1712 1690 1712 0.97 17 20 5.2e-06 0.00067 21.0 1.0 1 23 1718 1740 1718 1740 0.97 18 20 0.00077 0.099 14.2 4.1 1 23 1746 1769 1746 1769 0.97 19 20 0.0028 0.36 12.4 1.9 1 23 1775 1797 1775 1797 0.98 20 20 0.0026 0.34 12.5 1.1 1 23 1803 1825 1803 1825 0.98
Sequence Information
- Coding Sequence
- ATGATGGCCGGTCGTATCGAGTGTTCCAATGAGCTACTAATTGGGGTAATGACAGAAGATAGCGAAACTGTTGACAAATTTCTAAAGCGAGGAATTAATCCAACATCAATAACACAAACTGGATTGACATTGATGGGATTAGCCTCTCGTCAAGGATCGATAAATGTTTTACGTCAGCTATTGGATTACTGCGAAAACCCATCTAAACACATATTTGTCGATAACGAACTGGAGTACCATGATTTAACCCCCGAAGGAATGAATGACCTCCAATGGGACGATGAAATAATCACAAACTCTATAGACAATGCTACTGATAATGAATGGACTACGCTATTTTTGTATTAcatcaaaataatcgaaaagaCACAGCAATTTCTGTCGAACACATCACCAGCCTCATCATCGGCCACCACAAATACACCAACTTATACATCAAAGATCAAATTGGATCCTAACATTTTAGATAATCATTCCCTTTCGCCATTGCATCATGCAGCGATTAACGGACATTTAGACTGTGTCCAGCTCCTATTGAATTGCGGATGCTCGGCAAATATTGAGACGTCTGATGGATATACGGCTTTACATTTGGCCGGCGATCACAAAGACATAGTCGAACTACTACTTAAGAATAATGCGAatccaaataaatttagttatgtTAAATTAGAAACACCACTCATGTTCGCCGCAAAAAAGGGCGATATCGAACTGATCGAGTTACTATTAAAGTATGGAGCTAATATAAATGCGCTCAACTACTTAGACCAATCGGCTGTTATTTTATCCGTGATACACAATCAATATGAATCGgATGATGGAGAAACATTATATTACAGTTTCGGAATCAAACAAGAATGTGATCCACTATTCAATGATAACACGGAATCCTCTTCCGAAactaaaaacataaacaataataaacttgAGTTTGGCGATGTTTCAGTCGAAAATATAGTGGAAGAGGTCAAACCGAATATACCATTTAATTGTGAAATATCAGTTTTATCAAATCATGATTCGAAATTCCTTCCAGTAAATAGCAGTCCAGTTGTTGGTAAAAATGAATGCATTGATGATGCATCAGAAACAATTgGTCAGACCGATGAATCTAAGAGTTTTAGTTTTGAAGtcaaacaacaatttaatacgAATGATGATATCAATTCTGAAACTGAAACCACAGATATTGACCAAAATATAAGCATTGCAGACGACTCCAATGGTAAAACATCATATCCTAAAACCAAACGTAAAACGGATAATGAAAAAGATTCAGATGAAACGAAAACTAAACAATATTCGTGTGAACAGTGCGACAGAAGTTTCACATCAAAAAGAGGATATTCAAATCATGTGAAAATCCACGATAAGGTATGCAGACTTTGTAAGGAAACCGATTGCAAATCGATGAATGTTGTACCAATTGAATTCCAATTGCCTTTGGATAGAAAGTTTAAGTGTTGCATGTgcgtgaaaatatttaaatcaagatCCGATTTGTTGGATCACGAACGTTGTCATTTGACGGATGAAGAACGGCCACATAAATGTGAAGTGTGTAATAAAGGTTTTCTTAGAAAATCTGCCCTTAAACTTCATTTTGGTACTCATATGGGAATAAAGTATCCCCATAACTATGGGCCTAAAAAAGCAAATAGAAATCCAAAAAAGGTTTCTCAGTCTGTGGTTTGTGATgATGATGGAGAAACATATTACAGTTTCGGAATCAAACAAGAATGTGATCCACTATTCAATGATAACACGGAATCCTCTTCCGAAactaaaaacataaacaataataaacttgAGCTTGGCGATGTTTCAGTCGAAAATGTAGTGGAAGAGGTCAAACCGAATATACCATTTAATTGTGAAATATCAGTTTTTTCaaataatgattcgaaattCCTTCCAGTAAATAGCAGTCCAATTGTTGGTAAAAATGAATGCATTGATGATGCATCAGAAACAATTGTAAGTCTTAGAGCCATTAATACTACAGACTTTCCGTGTGAGCATTGCGATAGAAGATTGAAATCAAAAGCAGGATATTCTATTCATGTTAAAACACACAATAAGGTAGtcaaacaacaatttaatacgAATGATGATATCAATTCTGAAACTGAAACCACAGATATTGACCAAAATATAAGCATTGCAGACGACTCCAATGGTAAAACATCATATCCTAAAACCAAACGTAAAACGGATAATGAAAAAGATTCAGATGAAACGAAAACTAAACAATATTCGTGTGAACAGTGCGACAGAAGTTTCACATCAAAAAGAGGATATTCAAATCATGTGAAAATCCACGATAAGGTATGCAGACTTTGTAAGGAAACCGATTGCAAATCGATGAATGTTGTACCAATTGAATTCCAATTGCCtttggatagaaaatttaagtGTTGCATGTGCGAGAAAACATTTAAATCAAGATCAGATTTGTTGGAACACGAACGTTGTCATTTGACGGATGAAGAACGGCCACATAAATGTGAAGTGTGTAATAAAGGTTTTCTTAGAAGAACTGCCCTTAAACTTCATTTTGGTACTCATATGGGAATAAAGTATCCCCATAACTATGGGCCTAAAAAAGCAAATAGAAATCCAAAAAAGGTTTCTCAGTCTGTGGTTTGTGATgATGGTGTCGGAGGAACATTATATTACAGTTTCGGAATCAAACAAGAATGTGATCCACTATTCAATGATCACACGGAATCCTTTTCCGAAACTAAAATcaacataaacaataataaacttgAGCTTGGCGATGTTTCAGTCGAAAATGTAGTGGGAGATGTAAAACCGAATATAccatttaattatgaaatatcAGTTTTATCAAATCGTGATTCGAAATTCCATCCAGTTAATAGCAGTCCAGTTGTTGATAAAAATGAATGCATTGATGATTCATCAGAAATAATTgATGGTGTCGGAGAAACATTATATTACAGTTTCGGAATCAAACAAGAATGTGATCCACTATTCAATAATCACACGGAATCCTCTTCCGAAACTAAAaccaatataaacaataataaacttgAGCTTGGCGATGTTTCAGTCGAAAATGTAGTGGAAGATGTAAAACCGAATGTACCATTTAATTGTGAAATATCAGTTTTATCAAATCGTGATTCGAAATTCCATCCAGTAAATGGCGGTCCAATTGTTGGTAAAAATGAATGCATTGATGATGCATCAGAAACAATTGTAAGTCTTAGAGCCATTAATACTACAGATTTTCCGTGTGAGCAGTGCGATAGGAGATTTAAATCAAAAGCAGGATATTCTAATCATGTTAAAACACACAATAAGgGTCAGACCGATGAATCTAAGAGTTTTAGTTTTGAAGTCAAACAACAATGTAATTGGAATGATGATTCCAATTCTGAAACTGAAACCACAGATACTCAACAAAATATAGGCATTGCAGACGACTCCAATGATAAAACATCATATCCAAAAACCAAACGTAAAACGGATAATGAAAAAGATTCAGATGAAACGAAAACTAAACATTATTCGTGTGAACAGTGCGACAGAAGTTTCACATCAAAAAGAGGATATTCAAACCATGTGAAAATCCACGATAAGgATGATGGAGAAACATTATATTACAGCTTCGGAATTAAACAAGAATGTGATCCACTATTCAATGATCACACGGAATCCTCTTCCGAAACTAAAATcaacataaacaataataaacttgAGCTTGGCGATGTTTCAGTCGAAAATGTAGTGGAAGATGTCAAACCAAATATACCATTTAATTGTGAAATATCAGTTTCATCAAATCGTGATTCGAAATTCCAACCAGTAAATAGCAGTCCAGTTGTTGGTAAAAATGAATGCATTGATGATGCATCAGAAACAATTGTAAGTCTTAGAGCCATTAATACTACAGACTTTCCGTGTGAGCAGTGCGATAGAAGATTTAAATCAAAAGCAGGATATTCTAATCATGTTAAAACACACAATAAGgATCAGACCGATGAACCTAAGAGTTTTAGTTTTGAAGTCAAACAACAATGTAATTCGAATGATGATTCCAGTTCAGAAACTGAAACCACAGATATTGACCAAAATATAGGCATTGCAGACGACTccaatgataaaaaattatatccaaAAACCAAACGTAAAACGGATAATGAAAAAGATTCAGATGAAACGAAAACTAAACATTATTCGTGTGAAGACTGCGATAGAAGATTCACATCAAAAATAGGATATGCAAACCATGTGAAAATCCACGATAAGCTATGCAGACTTTGTAAGAAAACCGGTTGCAAATCGATGGATGTTGTACCAATTGAACTCCAATTGCCtttggatagaaaatttaagtGTTGCTTGTGcgagaaactatttaaatctaGATCCGATTTGTTGGGTCACGGACGTTGTCATTTGACGGATGAGGAACGGCCACATAAATGTGAAgGTCATACCGATGAATCTATGAGTTTAACTTTTGAAGTCAAGCAACAATGTAATTCGAATGATGAGTCCAAATCAAAAACTGAAACCACTGAAACTGGTGATATTGACCAAAATATAAGCATTGCAGACGTATCAAATGATAACACATCATATCCTAAAACCAAACGTAAACCAGACGATGAAAAAGATTCAGatgaaacaaaaactaaacattATTCGTGTGAACAGTGCGACAGAAGATTCACATCAAAAATAGGATATGCAAACCATGTGAAAATGCACGATAAGGTATGTAGACTTTGTAAGAAAAACGGTTGCAAATCGATGGATGTTCTACCAATTGAGCTCCAATTGCCtttggatagaaaatttaagtGTTGCTTGTGcgagaaactatttaaatcaagATCCGATTTGTTGGGTCACGGACGTTGTCATTTGACGGATGAGGAACGGCCACATAAATGTGAAGTGTGTAACAaaggttttattaaaaaatctgCTCTTAAACTTCATTTTGGTATTCATATGGGTATAAAGTATCCCTATCATTATAGGCCTAGAAAAGTAAGTAGAAGGCCAAAAAATGTTTCTCGGTCTGTGGTTTGTGATGTATGTGGGCAAACCCTTGCCTCAAAAATGGTCCTTAAAATCCACTACAGAAAGCATACGGGTGAAACACCATACGATTGTCCATTTTGTGACAAGAAATTTAATAGTTCGAGTAGTCTAATTAAACATAAACTAGTACATACAGGAGAAAGGCCACATAAATGCGAAATATGTGAGAAATCATATTGtgaaaagaattatttaaaaactcaTATCGATACAGTTCACTGCGGAGCCAAACCGCATCAGTGTCCGTtctgtaataataaatatacgGCACGGAGAGCTTTAACAGTTCATATGCGATTGCACACTGGTGAGAGACCTTTTAAGTGCCAATACTGTTCAGAAGATTTTTACGATTCGGCGATGTGGCGAAGACATGAACTGAAGCATAAAGGGATCAAACCAAAAtactataaaagaaaaaataaacaaatacgtaAATCGAAGCCTGATACTAGCAAAGAGGCTCGCCAAGAgcagaaataa
- Protein Sequence
- MMAGRIECSNELLIGVMTEDSETVDKFLKRGINPTSITQTGLTLMGLASRQGSINVLRQLLDYCENPSKHIFVDNELEYHDLTPEGMNDLQWDDEIITNSIDNATDNEWTTLFLYYIKIIEKTQQFLSNTSPASSSATTNTPTYTSKIKLDPNILDNHSLSPLHHAAINGHLDCVQLLLNCGCSANIETSDGYTALHLAGDHKDIVELLLKNNANPNKFSYVKLETPLMFAAKKGDIELIELLLKYGANINALNYLDQSAVILSVIHNQYESDDGETLYYSFGIKQECDPLFNDNTESSSETKNINNNKLEFGDVSVENIVEEVKPNIPFNCEISVLSNHDSKFLPVNSSPVVGKNECIDDASETIGQTDESKSFSFEVKQQFNTNDDINSETETTDIDQNISIADDSNGKTSYPKTKRKTDNEKDSDETKTKQYSCEQCDRSFTSKRGYSNHVKIHDKVCRLCKETDCKSMNVVPIEFQLPLDRKFKCCMCVKIFKSRSDLLDHERCHLTDEERPHKCEVCNKGFLRKSALKLHFGTHMGIKYPHNYGPKKANRNPKKVSQSVVCDDDGETYYSFGIKQECDPLFNDNTESSSETKNINNNKLELGDVSVENVVEEVKPNIPFNCEISVFSNNDSKFLPVNSSPIVGKNECIDDASETIVSLRAINTTDFPCEHCDRRLKSKAGYSIHVKTHNKVVKQQFNTNDDINSETETTDIDQNISIADDSNGKTSYPKTKRKTDNEKDSDETKTKQYSCEQCDRSFTSKRGYSNHVKIHDKVCRLCKETDCKSMNVVPIEFQLPLDRKFKCCMCEKTFKSRSDLLEHERCHLTDEERPHKCEVCNKGFLRRTALKLHFGTHMGIKYPHNYGPKKANRNPKKVSQSVVCDDGVGGTLYYSFGIKQECDPLFNDHTESFSETKININNNKLELGDVSVENVVGDVKPNIPFNYEISVLSNRDSKFHPVNSSPVVDKNECIDDSSEIIDGVGETLYYSFGIKQECDPLFNNHTESSSETKTNINNNKLELGDVSVENVVEDVKPNVPFNCEISVLSNRDSKFHPVNGGPIVGKNECIDDASETIVSLRAINTTDFPCEQCDRRFKSKAGYSNHVKTHNKGQTDESKSFSFEVKQQCNWNDDSNSETETTDTQQNIGIADDSNDKTSYPKTKRKTDNEKDSDETKTKHYSCEQCDRSFTSKRGYSNHVKIHDKDDGETLYYSFGIKQECDPLFNDHTESSSETKININNNKLELGDVSVENVVEDVKPNIPFNCEISVSSNRDSKFQPVNSSPVVGKNECIDDASETIVSLRAINTTDFPCEQCDRRFKSKAGYSNHVKTHNKDQTDEPKSFSFEVKQQCNSNDDSSSETETTDIDQNIGIADDSNDKKLYPKTKRKTDNEKDSDETKTKHYSCEDCDRRFTSKIGYANHVKIHDKLCRLCKKTGCKSMDVVPIELQLPLDRKFKCCLCEKLFKSRSDLLGHGRCHLTDEERPHKCEGHTDESMSLTFEVKQQCNSNDESKSKTETTETGDIDQNISIADVSNDNTSYPKTKRKPDDEKDSDETKTKHYSCEQCDRRFTSKIGYANHVKMHDKVCRLCKKNGCKSMDVLPIELQLPLDRKFKCCLCEKLFKSRSDLLGHGRCHLTDEERPHKCEVCNKGFIKKSALKLHFGIHMGIKYPYHYRPRKVSRRPKNVSRSVVCDVCGQTLASKMVLKIHYRKHTGETPYDCPFCDKKFNSSSSLIKHKLVHTGERPHKCEICEKSYCEKNYLKTHIDTVHCGAKPHQCPFCNNKYTARRALTVHMRLHTGERPFKCQYCSEDFYDSAMWRRHELKHKGIKPKYYKRKNKQIRKSKPDTSKEARQEQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -