Tlat016241.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tipula lateralis
Gene Symbol
-
Assembly
GCA_963932295.1
Location
OZ010737.1:73307380-73311088[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.0042 0.55 11.9 2.4 1 23 188 210 188 210 0.98
2 19 0.99 1.3e+02 4.4 3.3 2 23 213 231 212 231 0.91
3 19 0.00057 0.074 14.6 0.5 1 23 237 259 237 259 0.98
4 19 8.1e-05 0.011 17.3 3.3 1 23 265 287 265 287 0.97
5 19 0.076 9.9 7.9 0.2 2 23 296 317 295 317 0.88
6 19 1.4e-07 1.8e-05 26.0 0.6 2 23 324 345 323 345 0.97
7 19 6.8e-05 0.0088 17.5 0.7 1 23 351 373 351 373 0.99
8 19 0.11 15 7.4 6.7 1 23 379 401 379 401 0.99
9 19 0.001 0.13 13.8 4.3 1 21 407 427 407 428 0.97
10 19 6.3e-05 0.0082 17.6 0.5 3 23 494 514 492 514 0.96
11 19 0.014 1.8 10.3 0.1 1 23 541 563 541 563 0.94
12 19 0.00097 0.13 13.9 1.7 1 20 569 588 569 591 0.92
13 19 0.0021 0.27 12.9 0.4 2 23 600 621 599 621 0.97
14 19 4.3e-05 0.0055 18.2 0.5 3 23 629 649 627 649 0.97
15 19 6.9e-06 0.00089 20.7 1.7 1 23 655 677 655 677 0.99
16 19 0.00013 0.017 16.7 0.3 1 23 683 706 683 706 0.96
17 19 0.00033 0.042 15.4 0.7 1 23 712 734 712 734 0.99
18 19 0.22 28 6.5 6.9 1 23 740 762 740 762 0.98
19 19 0.00071 0.092 14.3 1.4 1 23 768 791 768 791 0.97

Sequence Information

Coding Sequence
ATGGCAATATATACACTACAGcaaagaatttttattgttaaacgtTATTATCAAACTGGCAATTGCACGGAAAAGGTTAAAAACGAATTTCCCGATGAATTCAATCAAAATGACTTGCCAACaaatgaacatataatcaaaatagttAACTTATTTGAGGAATACGGTAGTGTAGTGCTGTTCACAGCTGAACAAAAACAAGAGgataatatatattcaaatgagGGTGCTTACGACGAAAACAATACAAATGTTAGTTCGAATGAAGTcgattctgaaattaaaattgaatcccTACTCTCGGCAACGAACCAACATCAACTAAAAGAAGATGAATTTGTGATAAAAAACGAATTGGTAActtcatttaatgaaaatattccagaattggtagaaaattttattgaagatgATGAAGAGTATGACACAGGGAACGATAGGAATTCTGACAATGAACCCGAGGAAGATACTGATCCAAAATGTGTTGATGGCGACTACCCAGAAAATTTAGTAGAAAAGTTTAttgataataatagtaatacaaACATAGACGATAAGATATATACATGTAAAGCTTGTCAGAAAACCTTTAAAATACGCCGTGCATACTCGAAACACCTTAATCTTCATAAAAAGCAGTGTCAATTGTGTGGCAAAATATGCAAGGATCTAATGAAACATATGGCAAAACATACCGGTGAACGTATTTATCAATGTACCGAATGTGGTTCGCAATTCAAAAGTATGGAAAGGCTAAAAGAGCATCAGGCAGTACATTCGGACGATCGTCCGTTTGCATGCGAAACatgtacaaaaaaattcaaaactcggAAACGGCTTCGAGATCATGTTCGAACACATCTATCAAACGCTGATCGGCCAATCAAGTGCGAAATTTGCGGGAAAGGTTTCCtatcaaatctaattttaaaaatacattctCGGACGCACACTGGGGAAAAATCATCAATGTGCAATATATGCGGAAAATCGTTTGTTTCTAATAACACGTTAAAAATACATATTCGTACGCATACCGGAGAAAAGCCATATCAATGTCCATTCtgtgataataaatataattcgtcGGGCAGTTTAAATATTCACAAGCGAATTCATACAGGTGAAAAGCCTTACAAATGTCAACATTGCTCAAAAGATTTTTATGATTTGGCAACGTGTCGAACACATGAAAGAACGCATACCGGAGACTATCCgtataaatgtaaaatatgcGGCAAAGCACATAATCATACTAGTAATTTAAAATCTCATATGAAACATGGTGACTCTCAAGAATCTGCGTATAACAGTTCCGATACTCAACCAAACGAACCATTAAAACATGAAGACGGATCAAATGATGATGATAGTTCCTGGATTTTTACAGACACAAAAACTAATTCAGATAGTTCTGTAATTAGTGAAGGTACATCAGAGATGGATAATAGCGAAGAAGAAACACTAATCGATATTGCTTGTGAACAGtgcgataaaaaatttaaaaccaaacgaGCATATTCAATTCACTTGCGTGCTCACAAAAAAGAATGcaaaatttgtaaacaaaagAGTTGTAACATGGCTAAACATATGGCTATTCATACAGGCGAACGCTTGTTTCCATGCAGCGAATGcgatttacaattaaaaaaaaaagtgcagTTAAAAGAACACGCCGTTGTTCATTCGGATGATAAACCGTACACATGTGAAACGTGCCAAAAGGCATTTAAAACACGAAAACGTTTAAAGGACCACGAACCGACTCATTTAACGAATGATGAGCGTCCCGTTAAATGCGAGGTTTGTGGAAAAGGATTCCTTACTAAACTCTCCCTTAAGCTTCATTTTCGAGTTCACACGGGTGAAAAGCAgtcaatttgtaaaatttgtaatcAGTCTCTGTCGTCAAATAACGCGCTTAAAGTTCATCTAAGAACACATACGGGCgaaaaaccttacaaatgttcGGTGTGCGACAACAAATTCAGCACAAAGGGTAGTCTCAATATTCACAAACGAAGTCATACTGGCGAAAGACCttttatatgtaatatttgtgaaaaatcgtttgtttcgagtaatgttttaaaaatgcATCGAGATACGATTCATACCGGAGAAAAGCCATATCAGTGTTCGTTATGCGATAATAGATATAATTCGAAGAATGGATTAAAAATTCACGAACGTGTACACACAGGCGAGAAACCTTACATATGCCAACATTGTTCGAaggatttttatgatttaactACATGCCGTAAACACGAACGAACGCATACTGGAGAAAAGCCATATAAATGTTTAACATGCGGGAAAGCACATAACCAATTAGGGAATTTAAAAACTCATATGAAActtgtacataaaataaatcaacaataa
Protein Sequence
MAIYTLQQRIFIVKRYYQTGNCTEKVKNEFPDEFNQNDLPTNEHIIKIVNLFEEYGSVVLFTAEQKQEDNIYSNEGAYDENNTNVSSNEVDSEIKIESLLSATNQHQLKEDEFVIKNELVTSFNENIPELVENFIEDDEEYDTGNDRNSDNEPEEDTDPKCVDGDYPENLVEKFIDNNSNTNIDDKIYTCKACQKTFKIRRAYSKHLNLHKKQCQLCGKICKDLMKHMAKHTGERIYQCTECGSQFKSMERLKEHQAVHSDDRPFACETCTKKFKTRKRLRDHVRTHLSNADRPIKCEICGKGFLSNLILKIHSRTHTGEKSSMCNICGKSFVSNNTLKIHIRTHTGEKPYQCPFCDNKYNSSGSLNIHKRIHTGEKPYKCQHCSKDFYDLATCRTHERTHTGDYPYKCKICGKAHNHTSNLKSHMKHGDSQESAYNSSDTQPNEPLKHEDGSNDDDSSWIFTDTKTNSDSSVISEGTSEMDNSEEETLIDIACEQCDKKFKTKRAYSIHLRAHKKECKICKQKSCNMAKHMAIHTGERLFPCSECDLQLKKKVQLKEHAVVHSDDKPYTCETCQKAFKTRKRLKDHEPTHLTNDERPVKCEVCGKGFLTKLSLKLHFRVHTGEKQSICKICNQSLSSNNALKVHLRTHTGEKPYKCSVCDNKFSTKGSLNIHKRSHTGERPFICNICEKSFVSSNVLKMHRDTIHTGEKPYQCSLCDNRYNSKNGLKIHERVHTGEKPYICQHCSKDFYDLTTCRKHERTHTGEKPYKCLTCGKAHNQLGNLKTHMKLVHKINQQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-