Basic Information

Insect: Tipula lateralis
Gene Symbol: -
Assembly: GCA_963932295.1
Location: OZ010737.1:189017179-189019394[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0068 0.88 11.2 0.2 1 20 120 139 120 143 0.92

2 12 0.0027 0.35 12.5 1.6 3 23 272 293 270 293 0.95

3 12 7.3e-06 0.00094 20.6 6.4 1 23 299 321 299 321 0.98

4 12 5.8e-06 0.00075 20.9 1.8 1 23 327 349 327 349 0.98

5 12 1.6e-07 2.1e-05 25.8 1.9 1 23 355 378 355 378 0.95

6 12 1.6e-06 0.00021 22.6 0.2 3 23 393 413 392 413 0.97

7 12 0.16 21 6.9 3.9 2 23 420 441 419 441 0.96

8 12 2.5e-06 0.00032 22.0 0.4 1 23 447 469 447 469 0.96

9 12 1.8e-06 0.00024 22.5 0.7 1 23 475 497 475 497 0.98

10 12 6.4e-06 0.00083 20.8 0.8 3 23 505 525 503 525 0.96

11 12 2.6e-07 3.3e-05 25.2 1.2 1 23 531 553 531 553 0.99

12 12 0.0013 0.17 13.5 1.5 1 23 558 581 558 581 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0068	0.88	11.2	0.2	1	20	120	139	120	143	0.92
2	12	0.0027	0.35	12.5	1.6	3	23	272	293	270	293	0.95
3	12	7.3e-06	0.00094	20.6	6.4	1	23	299	321	299	321	0.98
4	12	5.8e-06	0.00075	20.9	1.8	1	23	327	349	327	349	0.98
5	12	1.6e-07	2.1e-05	25.8	1.9	1	23	355	378	355	378	0.95
6	12	1.6e-06	0.00021	22.6	0.2	3	23	393	413	392	413	0.97
7	12	0.16	21	6.9	3.9	2	23	420	441	419	441	0.96
8	12	2.5e-06	0.00032	22.0	0.4	1	23	447	469	447	469	0.96
9	12	1.8e-06	0.00024	22.5	0.7	1	23	475	497	475	497	0.98
10	12	6.4e-06	0.00083	20.8	0.8	3	23	505	525	503	525	0.96
11	12	2.6e-07	3.3e-05	25.2	1.2	1	23	531	553	531	553	0.99
12	12	0.0013	0.17	13.5	1.5	1	23	558	581	558	581	0.97

Sequence Information

Coding Sequence: ATGGATCCGATCACGGGAAATGCTATAGTTCTGAAAATGGATTTGGTATGTCGAACGTGCCTCAATGAATCAACAAATATGAAATCGATATTTATGAATGATATTTGTAAAATGTTACAGTCGTGTTCTGGATTGAATATTCATGCAATGGATGGTTTTCCTACCAACATATGCACCGAGTGTTTAAACAAAGTACACATCTCGTACGAATTTCGACAGCAGTGTCAACTATCGCATAATGCGCTAGTAAATTTTATCGGGGCTAAAATGAATGGCGATCTAGACTCTGAACTAGAAAATAgattacaaaatgaaaatacacaATCGGATACAAAGATGGtgaatgattttgaaatatttaagtgtaGTATATGTCCGAATCAGTATACAACGCTGGCACAGTTGCAAGAACATTTTGGGGGCGATCACCCAGACGAGGCACAGGAAGAAAAGTTGGAAGATGCTAATTTGGTCATTATTAATGGGAGTGCTGATGAAATATCGGAGGCAGATAACACTTCGAGTCCGTTTGACGATAAAACCGACTGTGGGGaagacaaatttatgattttaacgGATCCAGAACTTTCAGCCTTAAATTTTAAAGAGGATAATGATGAACAGGATCATGATCCGGATGAAGACGACGAATACCACCAGAGCGATGAAGAAACTGGTGATGAAAGCGACGATAGTCTTGCTAATGGCATGCTCATctatgacgatgatgatgatatgaACAAAGATAAATCAGTCACAAGGCGCAACACTAAATCGTCGGATGAAGGTGGTCAGCAAGAAGAGCCTTCGAACTGTACCCTATGTAACATAACGTTCGAAAAGAAGTCTAAATATTACCAGCACATGGAATCACAACACAAGGAGATTAAACTGCATCAGTGCGATCAGtgtgataaaaaattttccCGTCTCACCCACTTGCGACGTCATCAAGTGACCCATTTAGACGTAAAACCATATCCTTGCGATCAATGCGATAAACGTTTTTCTCGTCTCGATCACAGAAATATACATATGAGGGCACATTCATATATTAAGCCATACAAATGTGAAGAGTGCGATAAAGCGTTTACACGACCGGCGCATTTGCGAAGACATCGGGAAAATCGGCACAATATGCCGGTTGAAAAGCCTACACCGTCCAAAAccgaaatttgtgaaatttgtcaaaaagggTTCACAACACCGAAATATCTTCAAATTCATATGAAAGTACATCGGGCGGTTAAGGAATGGACATGTAAATTTTGCCAACTGAAATTTAGTTCGAAACAAGACCACAACGATCATCAGAAGGTGCATGTGAATGAGCGACCTTTCTTGTGTTCAGAATGTGGATTACGATTTGTTCGTAATGATTATTTAGTAATTCATATGCGGCGCCATAAAGGTGAAAAACCTTACAAATGCAAATTTTGTGGAAAAGGATTTCCACGGGCGACCGATTTAACAGTACACGAAAGATACCATACGGGAGAAAAAACCCATTTGTGTACGATATGCGGTAAAGGTTTTCAACGTGCCTACAATCTATTGGTTCATACTCGTGTGCATACTGGTGAACGGCCATATAAATGTCCTCATTGCGATAAAAGTTTTGCCCAGGGTAATGATTTGAAGGCTCATGTTCGACGGCACACAGGCGAACGATTTAAGTGTGATATATGCGGCGATGGTTTTATCCAAGGATACCATCTAACGCAGCATAAACGCAATCAGCACGGAATCGATATGAAATCACATATAAGACGAGTTGAGAAGTTTATCACACCAATGGCCCAGCAGCAGCGAGTActagaacaacaaaaaatggcACATGAGCAAAAAACAAACCCGAATGTGCCAACTGTACCAGTAAAACATTCGCAAACGATCGAGGACCTGCAAGACAACAAGtcaaatattccaaaattaacCATTATTCCAGAGTTTGAATTGCGGCATCGAGAAATTGCTGCGTTAACATCTTCATCGCCACAGCTACAGCAGCAACAAGTTGTGTACACGACACAATCACAGGGACAGCAATTACCGACCACTATGCATAATATGATGAACGAAACGATTGTCAAAATGGAGCAGATCGATGAAATTAACCAGATCACGATAATGAACTATCAAAACTAA
Protein Sequence: MDPITGNAIVLKMDLVCRTCLNESTNMKSIFMNDICKMLQSCSGLNIHAMDGFPTNICTECLNKVHISYEFRQQCQLSHNALVNFIGAKMNGDLDSELENRLQNENTQSDTKMVNDFEIFKCSICPNQYTTLAQLQEHFGGDHPDEAQEEKLEDANLVIINGSADEISEADNTSSPFDDKTDCGEDKFMILTDPELSALNFKEDNDEQDHDPDEDDEYHQSDEETGDESDDSLANGMLIYDDDDDMNKDKSVTRRNTKSSDEGGQQEEPSNCTLCNITFEKKSKYYQHMESQHKEIKLHQCDQCDKKFSRLTHLRRHQVTHLDVKPYPCDQCDKRFSRLDHRNIHMRAHSYIKPYKCEECDKAFTRPAHLRRHRENRHNMPVEKPTPSKTEICEICQKGFTTPKYLQIHMKVHRAVKEWTCKFCQLKFSSKQDHNDHQKVHVNERPFLCSECGLRFVRNDYLVIHMRRHKGEKPYKCKFCGKGFPRATDLTVHERYHTGEKTHLCTICGKGFQRAYNLLVHTRVHTGERPYKCPHCDKSFAQGNDLKAHVRRHTGERFKCDICGDGFIQGYHLTQHKRNQHGIDMKSHIRRVEKFITPMAQQQRVLEQQKMAHEQKTNPNVPTVPVKHSQTIEDLQDNKSNIPKLTIIPEFELRHREIAALTSSSPQLQQQQVVYTTQSQGQQLPTTMHNMMNETIVKMEQIDEINQITIMNYQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -