Basic Information

Insect: Tipula lateralis
Gene Symbol: -
Assembly: GCA_963932295.1
Location: OZ010737.1:186602611-186604314[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.002 0.25 12.9 5.0 3 23 228 248 226 248 0.96

2 11 8.4e-06 0.0011 20.4 4.5 1 23 254 276 254 276 0.98

3 11 4.4e-05 0.0057 18.1 0.2 3 23 284 304 282 304 0.98

4 11 3.9e-06 0.00051 21.4 0.8 1 23 310 334 310 334 0.95

5 11 2.9e-06 0.00038 21.8 0.7 2 23 341 362 341 362 0.97

6 11 1.5e-09 1.9e-07 32.2 1.1 1 23 368 390 368 390 0.99

7 11 0.00034 0.044 15.3 0.6 1 23 396 420 396 420 0.97

8 11 0.00015 0.02 16.4 6.3 3 23 431 451 429 451 0.97

9 11 4.4e-05 0.0057 18.1 1.2 1 23 457 479 457 479 0.98

10 11 3e-07 3.9e-05 24.9 0.7 1 23 485 507 485 507 0.99

11 11 1.1e-05 0.0015 20.0 1.7 1 23 513 535 513 535 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.002	0.25	12.9	5.0	3	23	228	248	226	248	0.96
2	11	8.4e-06	0.0011	20.4	4.5	1	23	254	276	254	276	0.98
3	11	4.4e-05	0.0057	18.1	0.2	3	23	284	304	282	304	0.98
4	11	3.9e-06	0.00051	21.4	0.8	1	23	310	334	310	334	0.95
5	11	2.9e-06	0.00038	21.8	0.7	2	23	341	362	341	362	0.97
6	11	1.5e-09	1.9e-07	32.2	1.1	1	23	368	390	368	390	0.99
7	11	0.00034	0.044	15.3	0.6	1	23	396	420	396	420	0.97
8	11	0.00015	0.02	16.4	6.3	3	23	431	451	429	451	0.97
9	11	4.4e-05	0.0057	18.1	1.2	1	23	457	479	457	479	0.98
10	11	3e-07	3.9e-05	24.9	0.7	1	23	485	507	485	507	0.99
11	11	1.1e-05	0.0015	20.0	1.7	1	23	513	535	513	535	0.97

Sequence Information

Coding Sequence: ATGATCGATTGTGCCGATTTTATCGATGAAACGGATAAAATTGACTTCAGCAAAATATGCCGTTGTTGTCTTCTTCAAAATACTAACATGAAATCAATATACGACGAGGATGTACCTGCTATGTTGATGGCGTGCACTCTAATCAATATTACGATGGACGATGGCTTGCCCTCATTAATATGTGCCAAATGTTATTCTCTAGTTAAAGAATCGTATTTATTCCGGCAGCTGTGTGAACGTTCTGATGCCACACTACGCCAGTATTTTGAGTCACAACAAATCACAAACCATTCTGTCGAACTGAATATCACTCTAAACTCGGACATACTTAATGAAGCGGgtgataatttaaatgaatatgAATTGGTATTGGTGGAGTATGTCAATGGAGAACAATCTGCTGTAGCCATTCCTTCTGAAAGCAATGTCAATTTACTACCAGACCAAACTGAAAACTGTACCGAAAACAATTTGGATGATGACTTAAAACTGAAAAGTACGTTAGATTTGGTAGAAGAGGACCAAGAAAATGATAAGTTTTTGAATGAGGAATTTATCGAAATTTTTCAACTGGAAACAATAAAGCAGGACGTTGATGAATTCGTAAATATTTGTAGTGATGTGCCATCAACTAAAGATTTGATTGTTGAAGATCCAACCCCATCTGGAGAcgaaattatttgtaatatttgtcaTAAATTATTTGGCGATAAGCACAAACTAAACCGCCATAAAAAACAGCATAACGCCGAACGACCATTTGAGTGCAACTACTGTAATAAAAGCTTCGTGGAGCGCGGTTGCCTAAAAAAACATCTGAAACGACATCGAGGCGAAAAGCCATTTGGATGTGGTGTCTGTGGAATAAAATTCTACGACAAGTCGAGTCTAGTGAGTCATACTAGGATTCATACTGGCGACAAGCCATTCATATGCCAATTTGAAAATTGTGGCAAAGCGTTCACCCAATCTTCTCAACTCGAGACGCACAAAAAAATTCACAGTTCAGAAAAGGAGAACGTTTGCGAAATATGTGATAAACGCTTTACACTAGCTTACCAGCTCAAAATTCATAAACGAACCCATACAAATGAGAAACCATACGAATGTGAGTACTGTGGTAAAAAATTCTCCCAATCGGGCAATTTAACTACTCATATACGCACCCATACAGGAGATAAACCATTCACGTGCTCATTTATATCATGCGAACGTAGTTTCGCCTCGGTAGGCGAACTAAATTCTCATCAGCGCAAGCACACTGGAATTAAActcgaaaaaaaattagcatGCCACGAATGCGGTAAAATGTGCCGAAGTCGATGTGAACTGCAAAATCATTTGAACACGCATGCTGGTGTTAAACCCTATGTATGCACGGTATGCGATAAAAATTTCCTGATGAGCTCCCATTTGGTCGTGCATATGAGAAATCATACGGGCGAGCGACCATATCAATGCGATTTTTGTCCCAAGGCGTTCACGACGCAGCAAATGATGAAGGCGCATATGCGAATACATACGGGCGAAAAGAAATTTGCTTGCGACGTGtgtgataaaaaatttacacagTCATCGGCACGAAATACGCATCGTAAGACCCATTCACGGGTTTGGAATAAGCAACAAAATGTCGAAACTTGTTAG
Protein Sequence: MIDCADFIDETDKIDFSKICRCCLLQNTNMKSIYDEDVPAMLMACTLINITMDDGLPSLICAKCYSLVKESYLFRQLCERSDATLRQYFESQQITNHSVELNITLNSDILNEAGDNLNEYELVLVEYVNGEQSAVAIPSESNVNLLPDQTENCTENNLDDDLKLKSTLDLVEEDQENDKFLNEEFIEIFQLETIKQDVDEFVNICSDVPSTKDLIVEDPTPSGDEIICNICHKLFGDKHKLNRHKKQHNAERPFECNYCNKSFVERGCLKKHLKRHRGEKPFGCGVCGIKFYDKSSLVSHTRIHTGDKPFICQFENCGKAFTQSSQLETHKKIHSSEKENVCEICDKRFTLAYQLKIHKRTHTNEKPYECEYCGKKFSQSGNLTTHIRTHTGDKPFTCSFISCERSFASVGELNSHQRKHTGIKLEKKLACHECGKMCRSRCELQNHLNTHAGVKPYVCTVCDKNFLMSSHLVVHMRNHTGERPYQCDFCPKAFTTQQMMKAHMRIHTGEKKFACDVCDKKFTQSSARNTHRKTHSRVWNKQQNVETC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -