Basic Information

Insect: Tipula lateralis
Gene Symbol: -
Assembly: GCA_963932295.1
Location: OZ010737.1:192238859-192240737[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.9 2.5e+02 3.5 0.3 2 16 114 128 113 130 0.80

2 14 1.9e-05 0.0025 19.3 0.9 1 23 184 206 184 206 0.98

3 14 0.0023 0.29 12.7 3.3 1 23 214 236 214 236 0.98

4 14 3.8e-05 0.0049 18.3 1.8 1 23 245 268 245 268 0.98

5 14 1.2e-05 0.0016 19.8 0.5 1 23 309 331 309 331 0.99

6 14 0.12 16 7.3 1.8 1 21 340 360 340 362 0.92

7 14 0.00018 0.023 16.2 0.6 1 23 368 390 368 390 0.98

8 14 4.7e-06 0.00061 21.2 1.5 1 23 396 418 396 418 0.98

9 14 1.4e-06 0.00018 22.9 1.5 3 23 431 451 430 451 0.99

10 14 8.5e-05 0.011 17.2 1.5 1 23 457 479 457 479 0.97

11 14 7.3e-06 0.00095 20.6 1.4 1 23 485 507 485 507 0.97

12 14 1.2e-07 1.5e-05 26.2 1.1 1 23 513 535 513 535 0.98

13 14 1.4e-06 0.00018 22.9 1.4 1 23 541 563 541 563 0.99

14 14 7.3e-06 0.00094 20.6 1.5 1 23 569 591 569 591 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.9	2.5e+02	3.5	0.3	2	16	114	128	113	130	0.80
2	14	1.9e-05	0.0025	19.3	0.9	1	23	184	206	184	206	0.98
3	14	0.0023	0.29	12.7	3.3	1	23	214	236	214	236	0.98
4	14	3.8e-05	0.0049	18.3	1.8	1	23	245	268	245	268	0.98
5	14	1.2e-05	0.0016	19.8	0.5	1	23	309	331	309	331	0.99
6	14	0.12	16	7.3	1.8	1	21	340	360	340	362	0.92
7	14	0.00018	0.023	16.2	0.6	1	23	368	390	368	390	0.98
8	14	4.7e-06	0.00061	21.2	1.5	1	23	396	418	396	418	0.98
9	14	1.4e-06	0.00018	22.9	1.5	3	23	431	451	430	451	0.99
10	14	8.5e-05	0.011	17.2	1.5	1	23	457	479	457	479	0.97
11	14	7.3e-06	0.00095	20.6	1.4	1	23	485	507	485	507	0.97
12	14	1.2e-07	1.5e-05	26.2	1.1	1	23	513	535	513	535	0.98
13	14	1.4e-06	0.00018	22.9	1.4	1	23	541	563	541	563	0.99
14	14	7.3e-06	0.00094	20.6	1.5	1	23	569	591	569	591	0.99

Sequence Information

Coding Sequence: ATGAATCTTGTAAAAAACGagcaaataaatataaaaaacatatgtCGCTTGTGTTTAAAAAGGAGTGAAGTGTTCCAATCGGTTTTCGATGGCTTAGAAGGCGACCTGAGCTACTCGGACCTTATTGTACTATTTGCTGGGAttacaatttatgtaaatgaCGGTTTGCCGGATAAAATATGCAATAGCTGTACAGGAAGTCTTATTGTATTACATAAATTGCGAGATGTTTGTGTTAAATCAGATATGTGGCTTCGGGAAAAGCTGAGTGATAAAATCAAACATGAAGAAGTTGTTCCTTTAGATGAAATCATTGTTGTAGATGATCCAGAGCAATGTAAATGTGAACAATGTGATAAGATCGTTGAAAATGATGATTCCCTTGAGGTGTGTGTTGATATGGTAGAAAATGAAGATTCTCTTGAGGTGGATACAAAAAATCACGATAGTAATATTATCGAAGAGCCCCATCACATTGATGTCATTGATATTGACAGTGACGATGTGCCATTGATCCAGTGcaaaacgaaaaataacaaacgaaaaaattatACATGCGATGTTTGCAATAAAGAATTTCCTAGTCGGCATGCTATAACACGACACTTGAACGTGCACAACAATGCAAAAGGTAAACAATTTAAGTGCGAGGTTTgtcatatatatttatcaacGCGGCGAACACTATTACGACATCGTAAAATTCATCTTAAACCTGAATCCGATAAACAGTACACGTGCACACAGTGCGAtggtaaaacatttaaaaatcagAAATCATACGCATCCCACATGCGGATACATAAAATGTACTACGAGACGAAAGAAAACTCAACGGACAGTGATCAGAACGACGATCAAAGTAGTGACGAAGAACTTAACGAAGCGGAAAAACCACCCAAACCAGCAAAACTCAAACGTGTATTCAAGTGCAAGGATTGCTTCCGGGTGTTCGCGAAACAGCCATCTCTGGCATCGCACGTCCGTGTCCACAAGGAAAATATCACAAAGAAGGAATACATTTGCGACATATGCAATCAAAAATTCATCGCCTATATATTTCTAACGCGACACTGGAAATGTCACCCGGAAAAAAAAGTTCACAAATGCGGTCTGTGCGATGAGGCCTTTGTATTGAAAGACCAACTATCCGATCATCTCAATAAACATAGCGGCTTTCGTCCTTACATATGCGAAGAGTgcgacaaaaaattttattcatacgaAACCCTACGCAAACATCGTAACGTTCACAATCCAAATCACAAAAAGGATAAAATCGAACGCCTATGCCCACATTGTGGCAAAGTGTTCAGCAACAATACGGTATTGCGACAACATTTGAATACCCATTCGGATACAAAACCATTTGCATGCGATCAATGTCCGAGCCGATTTGTTTCAAAGCGATACCTAAAGAAACACGTTAAAACTCATGCGGGCCTTAAACCACACGTATGCGATGAATGTGGTAATACGTTTGCCAAGAAATCATCGCTCGTTAAGCATAAACGTATACATACGGGTGAAAAACCATATGCATGTACTAGTTGCGACAAACGCTTTAATTCGtcagaaaatttaaaacgacacaTTCGAATACATACTGGAgaaaaaccttacaaatgtaAGTTTTGCGATCGAGCCTTTGCACAAAGTAGTGAATTGACGGGACACACGCGAAAACATTTAGGCGATAACATATATCAATGTGAGAAATGTCCAAAAGCTTTTCGGCTGCACGGTGAGCTAAGAGAACACACTCGAATGCATTTTTTAGCGGAGAAAGAAGCAACTGAAGAAGTAGTTGAATAA
Protein Sequence: MNLVKNEQINIKNICRLCLKRSEVFQSVFDGLEGDLSYSDLIVLFAGITIYVNDGLPDKICNSCTGSLIVLHKLRDVCVKSDMWLREKLSDKIKHEEVVPLDEIIVVDDPEQCKCEQCDKIVENDDSLEVCVDMVENEDSLEVDTKNHDSNIIEEPHHIDVIDIDSDDVPLIQCKTKNNKRKNYTCDVCNKEFPSRHAITRHLNVHNNAKGKQFKCEVCHIYLSTRRTLLRHRKIHLKPESDKQYTCTQCDGKTFKNQKSYASHMRIHKMYYETKENSTDSDQNDDQSSDEELNEAEKPPKPAKLKRVFKCKDCFRVFAKQPSLASHVRVHKENITKKEYICDICNQKFIAYIFLTRHWKCHPEKKVHKCGLCDEAFVLKDQLSDHLNKHSGFRPYICEECDKKFYSYETLRKHRNVHNPNHKKDKIERLCPHCGKVFSNNTVLRQHLNTHSDTKPFACDQCPSRFVSKRYLKKHVKTHAGLKPHVCDECGNTFAKKSSLVKHKRIHTGEKPYACTSCDKRFNSSENLKRHIRIHTGEKPYKCKFCDRAFAQSSELTGHTRKHLGDNIYQCEKCPKAFRLHGELREHTRMHFLAEKEATEEVVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -