Tlat022785.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- -
- Assembly
- GCA_963932295.1
- Location
- OZ010737.1:189003972-189006618[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0027 0.35 12.5 0.5 1 23 212 235 212 235 0.95 2 17 7.7e-06 0.00099 20.5 0.7 2 23 332 354 332 354 0.95 3 17 0.27 35 6.2 0.5 2 23 381 403 380 403 0.93 4 17 0.00027 0.035 15.7 2.6 1 23 409 431 409 431 0.99 5 17 6.1e-06 0.00079 20.8 4.6 1 23 437 459 437 459 0.98 6 17 4.5e-06 0.00058 21.2 1.5 1 23 465 488 465 488 0.97 7 17 0.00036 0.047 15.2 6.6 1 23 496 518 496 518 0.98 8 17 1.3e-05 0.0017 19.8 0.3 3 23 526 546 525 546 0.97 9 17 0.00052 0.067 14.8 1.5 1 23 552 575 552 575 0.90 10 17 3.8e-06 0.00049 21.5 0.0 3 23 591 612 590 612 0.95 11 17 0.00082 0.11 14.1 4.0 1 23 620 642 620 642 0.95 12 17 5.8e-05 0.0075 17.8 3.3 1 21 648 668 648 670 0.95 13 17 0.43 56 5.6 4.8 1 23 676 699 676 699 0.95 14 17 2.9e-07 3.7e-05 25.0 1.8 1 23 705 727 705 727 0.99 15 17 2.4 3e+02 3.2 0.1 2 20 733 755 732 757 0.84 16 17 4.8e-05 0.0062 18.0 2.7 1 20 786 805 786 808 0.93 17 17 4.3e-06 0.00056 21.3 3.1 1 23 814 837 814 837 0.96
Sequence Information
- Coding Sequence
- ATGGATCTAATAGCAAATCAAGATGTTAAAAAAGAGTTGGTATGTCGAACATGTTTGaatgaatcaaataatttgaaaccATTTTTTATGGATGATGGCAATgagatatttaaaatgttacaGTGCTGTTCCGACTTAAACATACTTTCAATGGTTGGATTCTCGAATTATATATGTTCAGTTTGTTTGAATAAGGCGCAGATTTCTTATGACTTTCAACAACAGTGCGAAATTTCGCATAATACGTTCATCAATTTTATGAGAGATCATCCAGACGAGACATACGAAGCAAAGATGAAAAACTCAAACCGGGTTCATATAATTAATGGCGGAAGTGCGTGTAAAGGCCTGATGAATACGGTATGTCGCACGTGCTTAAATGAGTCGATTAATATGAAACCACTATTTGTAGATAACGAAAACAATATTTATGAAATGTTGCAGTTTTGCTGTGGATTGAAGATTCATGCTATGGATGGATCACCGACCAATATCTGTTCAGATTGTTTGAATAAACTGAATATTTTCTATGAATTTCGAAAGCAATgcgaaatttttgtaaatttaaatcaatccaAAATTTGTGGAGAGTTGAAttggaatattaaaaaatgtacatccagttttgaaatttatgatTGTGGTATGTGTCCTAATCGGTACTCTACGTTATCCCAGCTTCAGGAGCATTTTAAGAACGATCATCAATCGAATGAATGTGAAATAAAGTTAGAGTTGTCGGATAATTTGATCTCGGATGCAGTCGACCTTGTAATGGATTGTGTCGaggaaaaatacaaaatttcagAAGCTGGTGAATATGATCATAACGACCCAAACGATGGCCACCAAAGTGATAAAGATGAGAAAATATCTTTACATCATAAAATCAAATCTAATGATAGTGATGTACAAAATGTGCCTTCGATCATATTGAATGATAAAAAAAGTAACATCAGGCGGCGACTAAATCTCACAGTACCCAAACCAGAAAGTTGTAAAATTTGTAGAAAATCATTCTCAACGCCAAGAAATCTACTACTTCATATAAAACTTGGGCATCCTACTGATGTAATTAGGCAGCTCGGAAATGTTAATATTCCAGAGGGAGTTAAGGTCGAAGACACACCTGTACCTCTGACTTGTACGGTTTGTAATCTAACGTTCGacattaaatacatttattaccAACACATGCAATCAGagcacaaaaatattaaattgttccaATGTAACCAGTGCAATTCAAAATTTGCCCAAATGAATCAACTGCGTCGACATGAAAAGACACACGTGAACATCAAATCGTTTTCTTGCGAACAATGCGGTTTGTGCTTTTCTCAAGAATACAATAAACGTCGTCATATGCGAACACATTTAAACATTACACCTTACAAATGTGAGCAATGTGATAAGACGTATACACGAGCAGATAAATTACGAATGCACCTTCAGAATCAACACAACGTTGAAGTGATTAAAATGCATCAGTGCAATCAATGTGATCGCaatttttttcatcttaaaCAACTAGAACGACACCTAAAAAGTCATTTAGATATGGGAAGTAATCCATGCGAAGAGTGCGGCATGGTCTTCGTTACCAAGTTTAACAAAATTCGACATATGCAAACACATTCAAATATCGATCCATACCGTTGTGACGAGTGTGATATGGGCTTTAAAAGAAAGGATGGTTTACATATGCATAAAGTAAATCGTCACGGTGAAAAGAGTGACACAAAATCGATGCCAATCAAACCAGAAATCTGTGAGATTTGTGAAAAGGCGTTCACAACACCAGGATATTTGAAGGCCCACATGCAACTTGGGCATCTAGCGGTTAAGACAGGATCGTTTTTATGCTCCGAATGTGGATTGCTATTTTCTCACCAcagcaaattaatttatcatatgCGACAACATAGTGGAGAGAAACCATATAAATGTACAGTTTGTAACAAAAGATTCGCCCGAACTGGTGATCTAAACAAGCACGTTCGATGCCATACGAAAGATAGGAAATATTTATGCACACTGTGTAATAGAGGATTCTATTGTGCCAACCATTTACGAGTCCATACCAAGAGATTACATTCTCGAGAACGACCTTATAAATGTCCACATTGTGATAAAAGTTATATCCAACGATATGAACTCGCTAACCACATTCAGCGACACGCAGGTAAACTATTGAAATGCAACATATGCGGTGATTTTGTCGACGAGTCTCTCATAACTCAACATAAATATGAAAATCACCAAACTATTGAGAAAACCGATGTTATCGATAAGTTCATCAGTTGGTTTGTACGATTAATTACTAATAAGCATGAAgagcatttaaataaaaaatataattgcacGATATGTGGAAAAGGATTCCCTCGTGCATATAGTCTTAAGCGGCATAGTAAATGCCATACTGGAGAACGACCTCATAATTGTACGCAGTGTGATAAAAGTTTTCCTGAAAGATATGATTTAAGGAAACATATGAAGCGAGTTCatacacaaaatgaaatataa
- Protein Sequence
- MDLIANQDVKKELVCRTCLNESNNLKPFFMDDGNEIFKMLQCCSDLNILSMVGFSNYICSVCLNKAQISYDFQQQCEISHNTFINFMRDHPDETYEAKMKNSNRVHIINGGSACKGLMNTVCRTCLNESINMKPLFVDNENNIYEMLQFCCGLKIHAMDGSPTNICSDCLNKLNIFYEFRKQCEIFVNLNQSKICGELNWNIKKCTSSFEIYDCGMCPNRYSTLSQLQEHFKNDHQSNECEIKLELSDNLISDAVDLVMDCVEEKYKISEAGEYDHNDPNDGHQSDKDEKISLHHKIKSNDSDVQNVPSIILNDKKSNIRRRLNLTVPKPESCKICRKSFSTPRNLLLHIKLGHPTDVIRQLGNVNIPEGVKVEDTPVPLTCTVCNLTFDIKYIYYQHMQSEHKNIKLFQCNQCNSKFAQMNQLRRHEKTHVNIKSFSCEQCGLCFSQEYNKRRHMRTHLNITPYKCEQCDKTYTRADKLRMHLQNQHNVEVIKMHQCNQCDRNFFHLKQLERHLKSHLDMGSNPCEECGMVFVTKFNKIRHMQTHSNIDPYRCDECDMGFKRKDGLHMHKVNRHGEKSDTKSMPIKPEICEICEKAFTTPGYLKAHMQLGHLAVKTGSFLCSECGLLFSHHSKLIYHMRQHSGEKPYKCTVCNKRFARTGDLNKHVRCHTKDRKYLCTLCNRGFYCANHLRVHTKRLHSRERPYKCPHCDKSYIQRYELANHIQRHAGKLLKCNICGDFVDESLITQHKYENHQTIEKTDVIDKFISWFVRLITNKHEEHLNKKYNCTICGKGFPRAYSLKRHSKCHTGERPHNCTQCDKSFPERYDLRKHMKRVHTQNEI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -