Basic Information

Insect: Tipula lateralis
Gene Symbol: -
Assembly: GCA_963932295.1
Location: OZ010737.1:195981881-195983740[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00012 0.015 16.8 1.6 1 23 141 163 141 163 0.98

2 14 9.7e-05 0.013 17.0 1.2 1 23 170 192 170 192 0.98

3 14 2.2e-05 0.0028 19.1 1.1 1 23 239 261 239 261 0.97

4 14 0.00037 0.048 15.2 1.2 1 23 268 290 268 290 0.98

5 14 1.5e-05 0.002 19.6 0.7 1 23 306 328 306 328 0.99

6 14 1.5e-05 0.0019 19.6 1.0 1 23 337 359 337 359 0.98

7 14 2.6e-05 0.0033 18.9 0.2 1 23 365 387 365 387 0.98

8 14 6.1e-05 0.0079 17.7 2.0 1 23 393 415 393 415 0.98

9 14 8.9e-07 0.00012 23.4 1.2 3 23 423 443 421 443 0.95

10 14 0.00051 0.066 14.8 2.4 1 23 449 471 449 471 0.97

11 14 8.5e-05 0.011 17.2 2.3 1 23 477 499 477 499 0.98

12 14 9.1e-05 0.012 17.1 2.3 3 23 507 527 505 527 0.98

13 14 5.7e-07 7.3e-05 24.1 0.6 1 23 533 555 533 555 0.99

14 14 3.4e-05 0.0044 18.5 2.0 1 23 561 583 561 583 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00012	0.015	16.8	1.6	1	23	141	163	141	163	0.98
2	14	9.7e-05	0.013	17.0	1.2	1	23	170	192	170	192	0.98
3	14	2.2e-05	0.0028	19.1	1.1	1	23	239	261	239	261	0.97
4	14	0.00037	0.048	15.2	1.2	1	23	268	290	268	290	0.98
5	14	1.5e-05	0.002	19.6	0.7	1	23	306	328	306	328	0.99
6	14	1.5e-05	0.0019	19.6	1.0	1	23	337	359	337	359	0.98
7	14	2.6e-05	0.0033	18.9	0.2	1	23	365	387	365	387	0.98
8	14	6.1e-05	0.0079	17.7	2.0	1	23	393	415	393	415	0.98
9	14	8.9e-07	0.00012	23.4	1.2	3	23	423	443	421	443	0.95
10	14	0.00051	0.066	14.8	2.4	1	23	449	471	449	471	0.97
11	14	8.5e-05	0.011	17.2	2.3	1	23	477	499	477	499	0.98
12	14	9.1e-05	0.012	17.1	2.3	3	23	507	527	505	527	0.98
13	14	5.7e-07	7.3e-05	24.1	0.6	1	23	533	555	533	555	0.99
14	14	3.4e-05	0.0044	18.5	2.0	1	23	561	583	561	583	0.99

Sequence Information

Coding Sequence: ATGGAAAACATAGACGAAAATACATGCCGAGTTTGCTTAGAAGCTACGACTGTCAACGAAAGCCAAGGAATATTTGAGATATTCTCTAATGAGTTATCCTATTCTGATGTTATTATATTGATTTCATCAATTGAAATAAAGCCAAATGATGGTCTACCGAACAAAGTATGTAGAAACTGTTCGAGTCGCGCGACTGATGCCTATAATTTTCGTAAACAATGTATAAGCTCGGATACGTTGCTTAAATCTAAATCAGAAACACCCAACATTATAAAAGTAGAAGTTCCGGAAGGAGATGTAAAAACTGAATGTTCTGACGATGAGAATAATGAGGATAGTATGCATGAACCAGATTGTAATCCACTTGATGAAATCGATGAACTCGTCGAAAAATCACCACCACGTAGAGGGAAAAGGCAACATAAGTGTGAAATCTGCCTCAAAGTATTTGACAAATCGTTTCTCCTACAATCgcatttaaatatacatacagcTAATGGGAAAGAATTTGAGTGTGATATATGTCATCGATTTTATGCTTTAAAGGGTAatcttattaaacataaaatggtTCATGATGAAGAACGATCAGAGAAGTCCGGCGATGAACAAACACCAGTaattaatgatgatgatgatatgaatgatatagATTATGTGCCGCCAACCGAAACCACACCAATACCAGAAAAACCGCGAAAAGTTCGAAAAACGCATAAATGTGAAATATGTTCGAAAGTTTTTGATAAACCTTCGCGACTCCAACGACATGCATCTGTGCATGCTGCTAATGGAAAAGAATTTGAATGTAACATATGTCACCGTTTTTTTGCAGCTGGTAGTACTCTTATCCGACATAAAATTACTCATCTGGCCCAATCTGAAGATAATGATAGTGCAAATCCGAAAAAACCGTTCAAATGTTTTGAATGTGATCGAATATTTGAGAAACAAGAGTCGATGGCATCTCATATGAGAATACACAAAACCAGTTCAACCGTTAAGGAATATAAATGCGATTACTGTCCGAAAGTATTCACTGAAATCAATCTATTGACAAGACATTCCAAATCACATGTTGAGATGAAAGTTTTTAAATGCGAAATATGTCCGGAGAGTTTTGGATCGAGACCTCAATTGATTGATCACACAAATAAGCATAAGGGTTTAAAGCCTTATGAATGTACAatatgtgaaaaaaaatttcattcatcAACTGTGCTCAATCAGCATATTAAAATCCACACAGATGATAAATCGCATTTATGTCCACAATGTGGTAAAGGGTTTAAAAACAATGGATATTTAAAACAACACATGATTTCACATTTGGGCGAAAAACTATTTGCTTGTCCTCAATGTCCAAATAAATATTGCACGAAAGgaaAGCTAAAATCTCATCTACAAAGTCATTCCGGATTGAAACCGTTTGTATGTGAATTATGTGGATCAAGTTTTACAAAGCATTACACTTTAACAGTCCACAAACGAATTCATTCAGGCGAGAAACCTTTTGGATGTGATACATGCCCTAAACGATTTATAtcgttaaatcatttaaaacggCATTCTCGTGTTCATACTGGTGAGAAACCTTATAAATGCCAGTACTGTGAACGTGCGTTTGCACAAAGTGGTGATCTGATAAAACATACCCGATCCCATATCGGTACAAATACGTATAAGTGTGATAAATGTGAAGCAACATTTCGGTTACACGGAGAACTTAAAAAACATATTCAAATGCATTTTTTGGCTGAAAAAGAAATGATGGAAGAAACGAAAAGTGAAAATTAA
Protein Sequence: MENIDENTCRVCLEATTVNESQGIFEIFSNELSYSDVIILISSIEIKPNDGLPNKVCRNCSSRATDAYNFRKQCISSDTLLKSKSETPNIIKVEVPEGDVKTECSDDENNEDSMHEPDCNPLDEIDELVEKSPPRRGKRQHKCEICLKVFDKSFLLQSHLNIHTANGKEFECDICHRFYALKGNLIKHKMVHDEERSEKSGDEQTPVINDDDDMNDIDYVPPTETTPIPEKPRKVRKTHKCEICSKVFDKPSRLQRHASVHAANGKEFECNICHRFFAAGSTLIRHKITHLAQSEDNDSANPKKPFKCFECDRIFEKQESMASHMRIHKTSSTVKEYKCDYCPKVFTEINLLTRHSKSHVEMKVFKCEICPESFGSRPQLIDHTNKHKGLKPYECTICEKKFHSSTVLNQHIKIHTDDKSHLCPQCGKGFKNNGYLKQHMISHLGEKLFACPQCPNKYCTKGKLKSHLQSHSGLKPFVCELCGSSFTKHYTLTVHKRIHSGEKPFGCDTCPKRFISLNHLKRHSRVHTGEKPYKCQYCERAFAQSGDLIKHTRSHIGTNTYKCDKCEATFRLHGELKKHIQMHFLAEKEMMEETKSEN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01052488;
90% Identity: -
80% Identity: -