Tlat023130.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- -
- Assembly
- GCA_963932295.1
- Location
- OZ010737.1:194405836-194409116[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.3e-05 0.0068 17.9 0.5 1 23 254 276 254 276 0.98 2 13 7.8e-05 0.01 17.3 1.5 2 23 283 304 282 304 0.96 3 13 0.00027 0.034 15.7 0.2 3 23 311 331 311 331 0.99 4 13 1.4e-05 0.0019 19.7 1.0 3 23 363 383 362 383 0.98 5 13 0.0015 0.2 13.3 1.8 1 23 467 490 467 490 0.95 6 13 6.3e-05 0.0081 17.6 0.3 1 22 497 518 497 518 0.96 7 13 0.00055 0.071 14.7 3.3 1 23 585 607 585 607 0.98 8 13 2.9e-08 3.8e-06 28.1 2.2 1 23 614 636 614 636 0.98 9 13 8.1e-08 1.1e-05 26.7 1.7 3 23 648 668 646 668 0.96 10 13 2.1e-05 0.0027 19.1 2.8 1 23 674 696 674 696 0.99 11 13 1.1e-06 0.00014 23.2 2.2 3 23 704 724 702 724 0.97 12 13 3.5e-07 4.5e-05 24.7 3.1 1 23 730 752 730 752 0.99 13 13 0.0013 0.17 13.5 0.1 1 23 758 780 758 780 0.98
Sequence Information
- Coding Sequence
- atggaTGAGAATATATCAAATAGtttagaatataatttaaatcggATATGTCGACTATGTTTGAATGAATATGATGAGCTCAAATCAATATTTCAATTGAACGAATATTACAATTCACAGCCATTGCATGAGATCATTATGGCTTGTGCCCAAATCCAGATTTTGGAAGATGATGGGATgccaaataaaatttgttctgGTTGTGTGCGACAAATGAATTTGGCAtacgaatttaaattaaaatgtgaaCAAAGTGATAATAAGCTTCGATcgtatataataagaaaatatcctACTAGAAATATTAAGTTTGCAATCTCGACGGAACCATCCTCGAACTATATAAAACAAGAAGATCAAGATTATTCCCTAGGTGCTGTTATTAAACCAGAAATATCGATAATCGAAGATGATCCACTAACtggaaatttttatacaaataatggACGTGAATTCAACGCCATAAATCAATTTAGTAATCAACAGCAACACAGTGTAGATGATAGTGTTGAACAGATAAACGGAATACAAAATGATATGTGTGGTGGTGGTGTACAAGTACAACAAAATACGtcatgtgatgatgatgatgattcaaATAATGATTTCAACGATCAATGCGATGATTTATTGaacgatgacgatgatgatgaacaAGTTAAAAAGGATGAACTATCgatctatataaaaaatgatccCGATTCAGATTTTAATGAAGAGAAATTTGATTACCAGTCAGCACGTAATGAACAAGGCAGGTACAGTTGTCATATATGTGAAAAGACTTTGGTTGATGCCAAAGGGTTGAAACTGCATATTCGTCTTCACACGGGAAACAAATTGAAACGATGCGATATTTGCAATAGAGgATTTGCTAAACAAAATCACTTGAATCGACATTTGGTGATACACAAGGGTAAACCAGCCGGTTGCGAGGAATGTGGTCTCACATTTCCATCTATAAATGAATTAAAGACACATTTGCTCACTCACAGTGATGCAAATACTAAAAAAAGTCGTAAGGCCAGTTGCAGTGAGATTCGGGAGTCCGATATAAACGACAATTCAAAGGAAAAATAtgctttatgtaaaatatgtgATACAACAttcacacaaaacaaacaacttCGAATACATCTGGAAAGCCATATGGATGTGAATTCatttcaaaatgttaatttacattcaaaactatttttatttgatttgacgAAAATCACACCAAATATCGAAGATCACGACACATTAGTCAAATATGTGATCAACGAGGTCAAAGCCAATAGTTTGACCCGCTTTTATCAAATAACAAATCGTAATGGTTATGAATATCAACTATCCGATTCTGAATCAGAAGACGAGGAACAAATTGATTCAAgtcgaattataaataattttccacatcAATGTCCAGCATGTGATTGCGTATTCAATCGTTCGTATAAATTAAGTTTGCATTTAGAAATCGAGCACACAGACTATCAAAAACAGTTTACCTGTGTTGATTGTGGCCGAAAATTTGCCACCGAATGGCTGTTCAATCGCCATTTGAGACGCCAAtgcaataataaattgaaacaatacTCATGcagtttatgtaaatttaaatttatgtggcAATACAGTTACGAATTGCATAACGAGAAATTTCATTCGGGCCGAAAGATAAAACGATCTACGATTGCGTCAACGTTACATTTACTATCGgttgataaaaaatcaaaaacaatgaAGGAAAGACCTaaagagaaaaattttaaatgtgccacatgcaataaattgttttatcggCAAGAGCATTTAGATCGACATGAGAAAATTCATATTCCATCCGAAAAGAAATTCGAGTGTACAATATGTCAGAAAAAGTTTAATCGTAAAGATAATTTACGATCGCATATGAGAGTCCACAAAGATGATAAGGAAGATACGGATAAACATCTTTGTGTGTATTGTGGACGAAGTTTCTCGAATTCGTCGAATTTAATTGTTCATATGCGACGCCATACGGGCGAAAAGCCATACAAATGTGATTTATGTGATAAAGGATTTCCACGATCGTCCGATTTACAGTGCCATCGACGTACCCATACAGGCGAGAAGCCTTGTCTGTGTACAATTTGTGGTAAAGGATTTTCAAGATCTAACAAACTTGTACGCCATATGCGCATTCATACAGGTGTTCGACCATATAAATGTACTCACTGTGATCGAGCTTTTACACAATCGAACGATTTAACACTTCACATAAGGCGCCATACTGGCGAAAAACCATATGTGTGTGGAATATGTGGTGATCGGTTTATTCAAGGTACCGCACTACAAACCCATCGACGAGTGCATGGCCATTACGAAGAAAATCAACCAGCACCATTTGCAAGTATCAGTGTTAACAATCCTAATCGTTATACGAATGCAAATCGTGTTAATCGTATTGGATTTATTCCACCGGCTACAGCATCGGAAACGCCTGCAAATTCTGTCATAAAACCAATCATATCAAGACGTTCCATACCAAATACAACAAATCTAACTCATTCGACTACAACAACACCATCCATTAACATAGCAGAGACTTTACCGAATGTtatgcaacaacaacaacaaatgaattCACCAATGCCAGTACTAAATCCACTAAATGTTATAAATTCGCCACGGTCTCAATTATCTAGTTCCTCTGCAACACCTACACCAATTGGAAATCCCCAACCTACTAATTTAGTCGGCAATACTAATCTTCATAATGCGCCACCTATACTAACCCCCCCATCTCATCCCACATCACAACGAATGCTACCAAATATTGGATTTCCGTACGCTCCAAACCtagaaatatttacaatattagaaatgtaa
- Protein Sequence
- MDENISNSLEYNLNRICRLCLNEYDELKSIFQLNEYYNSQPLHEIIMACAQIQILEDDGMPNKICSGCVRQMNLAYEFKLKCEQSDNKLRSYIIRKYPTRNIKFAISTEPSSNYIKQEDQDYSLGAVIKPEISIIEDDPLTGNFYTNNGREFNAINQFSNQQQHSVDDSVEQINGIQNDMCGGGVQVQQNTSCDDDDDSNNDFNDQCDDLLNDDDDDEQVKKDELSIYIKNDPDSDFNEEKFDYQSARNEQGRYSCHICEKTLVDAKGLKLHIRLHTGNKLKRCDICNRGFAKQNHLNRHLVIHKGKPAGCEECGLTFPSINELKTHLLTHSDANTKKSRKASCSEIRESDINDNSKEKYALCKICDTTFTQNKQLRIHLESHMDVNSFQNVNLHSKLFLFDLTKITPNIEDHDTLVKYVINEVKANSLTRFYQITNRNGYEYQLSDSESEDEEQIDSSRIINNFPHQCPACDCVFNRSYKLSLHLEIEHTDYQKQFTCVDCGRKFATEWLFNRHLRRQCNNKLKQYSCSLCKFKFMWQYSYELHNEKFHSGRKIKRSTIASTLHLLSVDKKSKTMKERPKEKNFKCATCNKLFYRQEHLDRHEKIHIPSEKKFECTICQKKFNRKDNLRSHMRVHKDDKEDTDKHLCVYCGRSFSNSSNLIVHMRRHTGEKPYKCDLCDKGFPRSSDLQCHRRTHTGEKPCLCTICGKGFSRSNKLVRHMRIHTGVRPYKCTHCDRAFTQSNDLTLHIRRHTGEKPYVCGICGDRFIQGTALQTHRRVHGHYEENQPAPFASISVNNPNRYTNANRVNRIGFIPPATASETPANSVIKPIISRRSIPNTTNLTHSTTTTPSINIAETLPNVMQQQQQMNSPMPVLNPLNVINSPRSQLSSSSATPTPIGNPQPTNLVGNTNLHNAPPILTPPSHPTSQRMLPNIGFPYAPNLEIFTILEM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01455062;
- 90% Identity
- -
- 80% Identity
- -