Tlat013086.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tipula lateralis
Gene Symbol
-
Assembly
GCA_963932295.1
Location
OZ010737.1:9354997-9357858[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.1e-05 0.0015 20.0 0.5 2 23 169 190 168 190 0.97
2 18 0.35 45 5.8 4.6 2 23 193 211 193 211 0.89
3 18 0.00048 0.062 14.9 1.3 1 23 217 239 217 239 0.97
4 18 0.00023 0.03 15.9 2.7 3 23 247 267 245 267 0.98
5 18 2.4e-05 0.0031 18.9 1.6 1 23 273 295 273 295 0.98
6 18 6.3e-08 8.1e-06 27.1 0.4 2 23 302 323 302 323 0.97
7 18 0.00027 0.034 15.7 2.0 1 23 329 351 329 351 0.98
8 18 8.9e-05 0.011 17.2 3.1 1 23 357 379 357 379 0.99
9 18 0.035 4.6 9.0 3.1 1 15 385 399 385 399 0.90
10 18 0.00013 0.017 16.6 1.6 2 23 526 547 525 547 0.97
11 18 0.25 33 6.3 1.5 2 23 550 568 549 568 0.73
12 18 2.4e-05 0.003 19.0 0.6 1 23 574 596 574 596 0.98
13 18 3.7e-05 0.0048 18.4 2.8 1 23 602 624 602 624 0.98
14 18 3e-05 0.0038 18.7 0.6 2 23 631 652 630 652 0.98
15 18 1.5e-05 0.0019 19.6 3.6 3 21 660 678 658 680 0.94
16 18 0.00024 0.031 15.8 2.0 1 23 686 708 686 708 0.98
17 18 8.9e-06 0.0011 20.3 2.8 1 23 714 736 714 736 0.99
18 18 0.00014 0.018 16.6 5.2 1 23 742 765 742 765 0.97

Sequence Information

Coding Sequence
atggcaatatttacattaaagcaaaagatatttattgtaaaacgcTATTATCAGGCAGGTAATTCAAcacaaatagttcaaaatgaatttccTAATGAGTTTAATCAGCATTTATCGCCTACGGTTGATAATATTCAAGAAATAGTTGAATTATTCGAAGAATTCGGCAGCGTATTTAAGATTAATGAAATAGAAACAGTTTATGAAGCACCTAACATTGgtttgGACGATGAACTGGAAATCAAAGTGGAgccaacattatcaatttatgaaTCAAACGATTTACTGCCGAACGAAGATGATGTccttaaaaatttagataataaaGAACAAAACAATTCAGGCAGTGATTATAGTTGTAGTGAAGAAGAGGATGAAGATGACGATGATAGGGACAAATCCGATTCTAATTCTTTAACAAGTGACGACGTAaaagatattttgaatttaaagaaTGAAGAAGAAGACGATAAAAGCGCtggtaacaaaataaaactagtaTTAAAATGTGAAGAATGTGGCAAGGAATTTGATCGGCGGGCACGATATTTACGGCACATGAATGTACATAAAAACCGTTGCGAGATTTGTGGTAAAAAATTTCACGATCGTGAGAAACATATGAAGAAACATACCGgtgaaaaaacatttcaatgcaCGCAATGTAACGCGAGATTTATTAATATAAGTAGATTAAACCATCATATGATTGGCCATTCAACGGCACGTCCGTTTGGATGTGATATTTGCCATAAAACGTTTAAATCAACCGATGGATTGCGAGGACACAAAAAGACTCATTCTTCCGAACGACCACACAAGTGTGATCAATGTGGCAAAGGATTTTTAAATAAAGGTGATTTGACAAAACATCAAAATGTCCATACGGGGCGGAAGCCAGCCGTTTGTCAAGTATGCGGTAAAGGTTTCTCATCAAATGATTCTCTAAAAGTTCATATGAGAACTCATACCGGCGAAAAACCTTACGAGTGTCAATACTGTGGGAAACAATTTAGCTGTTCGAATGTACTTAAAATACACATTCGAGTGCATACTGGCGAAAAACCGTACAAATGTAAATACTGTGAAAAAGCATTTGCGGATTCATCAACTTGTAGAGCACATGAACGAACCCATACAGGCGATTATCCATATAAATGCAAAATTTGTGGAAAAACGTGCAATCAATCGAGAAATTCCACTGAAACGGTTCAAATTGAATTTCCAGACGCATTTAGTGATGATAATACATCATTATCGTGTGAAAGTATCATCGAGttggtaaatttatttgaagaatTTGGAGCTGTCTATCCCAGTTCAGAGAAACATGATTTAAGCTTAGATCATGACTATaaaGATGAGGAATTCGAAATAAAAGTAGAACCACTTCAATTCGCCTATAATAAAGAACCTGAAAGTGAAGATGACGATGATAGTAAAATTGACAGAGAATTGGCCCTTTTTCCCGATGATCATATAGACAACGAATTTTGTGATGATGAACTAATTGACCAGTCCATAAAATCGGAGGACGAGGAGAATACGGAAGATAAATCAACGAAATTggcattaaaatgtaaaatttgctTTAAGGAATTCGACAAGGAAATGTACCTAAACCGACATATCAAATCACATAGTAAAACATGCGAAATATGCGGGAAAAAGTATCAAAATCGTGCGAATCATATGAAGAAACATTCGGGTGACAAAACATTTCAGTGTACAGAATGTGGAGCGCGATTTATAAATATGAGCCGACTAAATAATCATATGACATCGCATTCAGAAGAGCGACCATTTGAATGCGCAACTTgccagaaaaaatttaaatcccgCGAACGATTACGAGTACATCAGAAGACCCACAATACAGACCGGCCTAATAAATGTGAAGTGTGTGGAAAaggttttttacaaaaatacgaTCTTAAGAAACATTTGAATGTGCATACAGGTGAACGGAAGTCTATATGTAGTATATGTGGTAAATGTTTTGTTTCGAATGATTCGCTTAAAATTCATATGCGGTGTCATACCGGTGAGAAGCCATACCATTGCAGATATTgcgagaaaaattttagttcctcgggagttttaaaaattcacgaaCGAATTCATACTGGTGAAAAAccatataaatgtaaatattgtgaTAAAGAATTTTATGATTCGTCTACACGGCGAGCACATGAACGTACGCACACCGGTGACTATCCATATAAGTGTACACTTTGTGGCAAAGCTCATAATCATCCCAGTAATTTAAAGTCACATATGAGACATGCCCACCGTGAagaacaattattaaattttaaatag
Protein Sequence
MAIFTLKQKIFIVKRYYQAGNSTQIVQNEFPNEFNQHLSPTVDNIQEIVELFEEFGSVFKINEIETVYEAPNIGLDDELEIKVEPTLSIYESNDLLPNEDDVLKNLDNKEQNNSGSDYSCSEEEDEDDDDRDKSDSNSLTSDDVKDILNLKNEEEDDKSAGNKIKLVLKCEECGKEFDRRARYLRHMNVHKNRCEICGKKFHDREKHMKKHTGEKTFQCTQCNARFINISRLNHHMIGHSTARPFGCDICHKTFKSTDGLRGHKKTHSSERPHKCDQCGKGFLNKGDLTKHQNVHTGRKPAVCQVCGKGFSSNDSLKVHMRTHTGEKPYECQYCGKQFSCSNVLKIHIRVHTGEKPYKCKYCEKAFADSSTCRAHERTHTGDYPYKCKICGKTCNQSRNSTETVQIEFPDAFSDDNTSLSCESIIELVNLFEEFGAVYPSSEKHDLSLDHDYKDEEFEIKVEPLQFAYNKEPESEDDDDSKIDRELALFPDDHIDNEFCDDELIDQSIKSEDEENTEDKSTKLALKCKICFKEFDKEMYLNRHIKSHSKTCEICGKKYQNRANHMKKHSGDKTFQCTECGARFINMSRLNNHMTSHSEERPFECATCQKKFKSRERLRVHQKTHNTDRPNKCEVCGKGFLQKYDLKKHLNVHTGERKSICSICGKCFVSNDSLKIHMRCHTGEKPYHCRYCEKNFSSSGVLKIHERIHTGEKPYKCKYCDKEFYDSSTRRAHERTHTGDYPYKCTLCGKAHNHPSNLKSHMRHAHREEQLLNFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-