Basic Information

Insect: Tipula lateralis
Gene Symbol: -
Assembly: GCA_963932295.1
Location: OZ010737.1:186822306-186828882[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 26 0.066 8.6 8.1 1.4 1 23 192 215 192 215 0.94

2 26 0.0019 0.24 13.0 0.4 1 23 225 247 225 247 0.98

3 26 0.039 5 8.8 2.4 1 23 253 275 253 275 0.98

4 26 0.038 4.9 8.9 2.5 1 23 281 303 281 303 0.98

5 26 0.0045 0.58 11.8 3.3 1 23 309 331 309 331 0.98

6 26 4.4e-05 0.0057 18.1 0.4 1 23 337 359 337 359 0.97

7 26 2.5e-06 0.00033 22.0 1.3 2 23 366 387 365 387 0.97

8 26 0.021 2.7 9.7 0.1 1 23 577 600 577 600 0.96

9 26 9.7e-07 0.00013 23.3 0.7 1 23 610 632 610 632 0.98

10 26 0.0013 0.16 13.5 0.0 1 23 637 659 637 659 0.98

11 26 0.0022 0.29 12.7 0.5 1 23 665 687 665 687 0.99

12 26 5.9e-05 0.0077 17.7 1.7 1 23 693 715 693 715 0.98

13 26 8.2e-05 0.011 17.3 1.3 1 23 721 743 721 743 0.99

14 26 5.9 7.6e+02 2.0 0.8 2 10 750 758 749 770 0.86

15 26 0.22 28 6.5 0.1 1 23 904 927 904 927 0.95

16 26 3.6e-05 0.0046 18.4 0.9 1 23 937 959 937 959 0.95

17 26 0.001 0.13 13.8 0.1 1 23 964 986 964 986 0.99

18 26 0.0073 0.94 11.1 0.8 1 23 992 1014 992 1014 0.99

19 26 8e-05 0.01 17.3 1.2 1 23 1020 1042 1020 1042 0.99

20 26 0.17 22 6.8 2.4 1 23 1198 1221 1198 1222 0.96

21 26 0.0056 0.73 11.5 0.8 1 23 1229 1251 1229 1251 0.96

22 26 1.1e-05 0.0014 20.0 1.1 1 23 1256 1278 1256 1278 0.98

23 26 0.0024 0.31 12.6 0.8 1 23 1284 1306 1284 1306 0.97

24 26 0.008 1 11.0 4.8 1 23 1312 1334 1312 1334 0.98

25 26 0.16 20 6.9 0.7 1 23 1340 1362 1340 1362 0.98

26 26 0.025 3.2 9.5 4.4 2 23 1369 1390 1368 1390 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	26	0.066	8.6	8.1	1.4	1	23	192	215	192	215	0.94
2	26	0.0019	0.24	13.0	0.4	1	23	225	247	225	247	0.98
3	26	0.039	5	8.8	2.4	1	23	253	275	253	275	0.98
4	26	0.038	4.9	8.9	2.5	1	23	281	303	281	303	0.98
5	26	0.0045	0.58	11.8	3.3	1	23	309	331	309	331	0.98
6	26	4.4e-05	0.0057	18.1	0.4	1	23	337	359	337	359	0.97
7	26	2.5e-06	0.00033	22.0	1.3	2	23	366	387	365	387	0.97
8	26	0.021	2.7	9.7	0.1	1	23	577	600	577	600	0.96
9	26	9.7e-07	0.00013	23.3	0.7	1	23	610	632	610	632	0.98
10	26	0.0013	0.16	13.5	0.0	1	23	637	659	637	659	0.98
11	26	0.0022	0.29	12.7	0.5	1	23	665	687	665	687	0.99
12	26	5.9e-05	0.0077	17.7	1.7	1	23	693	715	693	715	0.98
13	26	8.2e-05	0.011	17.3	1.3	1	23	721	743	721	743	0.99
14	26	5.9	7.6e+02	2.0	0.8	2	10	750	758	749	770	0.86
15	26	0.22	28	6.5	0.1	1	23	904	927	904	927	0.95
16	26	3.6e-05	0.0046	18.4	0.9	1	23	937	959	937	959	0.95
17	26	0.001	0.13	13.8	0.1	1	23	964	986	964	986	0.99
18	26	0.0073	0.94	11.1	0.8	1	23	992	1014	992	1014	0.99
19	26	8e-05	0.01	17.3	1.2	1	23	1020	1042	1020	1042	0.99
20	26	0.17	22	6.8	2.4	1	23	1198	1221	1198	1222	0.96
21	26	0.0056	0.73	11.5	0.8	1	23	1229	1251	1229	1251	0.96
22	26	1.1e-05	0.0014	20.0	1.1	1	23	1256	1278	1256	1278	0.98
23	26	0.0024	0.31	12.6	0.8	1	23	1284	1306	1284	1306	0.97
24	26	0.008	1	11.0	4.8	1	23	1312	1334	1312	1334	0.98
25	26	0.16	20	6.9	0.7	1	23	1340	1362	1340	1362	0.98
26	26	0.025	3.2	9.5	4.4	2	23	1369	1390	1368	1390	0.96

Sequence Information

Coding Sequence: atgaataatatatgtCGTACTTGTTTGTCGCCTAATGACAATTTAATCCCATTATTTGAATGGAAATTAGTAGATAACCAAATTCTTACACTGTCAAAAATTGTATCATTATGCACTGGCCTAGAAatttcgaaattcgataatttttcaaattccaTTTGCGCATTGTGTTCATCTGCACTGTTGCAATCATTTGGATATAGGAAAAAATGTTGGGATTCACATAGGATTTTGcttaaaagacaaaataaacagaaaagtGAAATTGTCGATACAAGTGCAAAACGGATTGACTATGAATGTAATGTGAATGTTAATGATGACTATAGTCTTAATAATGATTATAGTGCTAACGATCATTATGTTGAAGTAAAATTAGAGTTAAATAATGCATACGAAGAAGTCgaaaataatgttaatgatCGTGTTTTAATAGATAATGAAACATCATTACCAGTTGGGCCcttattagaaaatgaaaccACTAGTGACGGTTATAAAATTGTACCGATGAATGATTTCCTTCATTATGTTGAATACAAAATTGATAAATCGCGACATTTCGGTAGAATATTTGTCTGTCGAAAATGTCCACAAGCCTATGAAAATCAACATTATATGGTTAATCATTTCAAATTAGctcacaaaacaatatttaaacttgaaaaagaatttaaatgtaatatttgtcCAAAAATTTACGGTGAAGAGAGTCGCTATCTTCGCCATTTACGTTGGCACAAGGATCGAACTTGTTTCGTATGTACCTATTGTGGTGTTACacttaaatgtaaatttacGCTAAAAGAGCATGTCCGAGTGCATACTGGTGAAAAACCACATAAATGTGATTATTGTGATTTTCGAAGTGGTAAACGGTCTGTAATAACGATCCACATGCGAACACATACGGGCGAGCGTCCTTTTATATGTCATATATGTAACAAACGATGTCCAACAACTGCAGCGAGAGCAACACACATGAAAACTCATTCAACTGAATTGAAATATGAAtgtaatatttgtaataaaaaatttcgaacCCCGGGCGTTTTATCAACTCATAAATTGATTCATGACCCTAGTAAATATAAAGAATGCACTATATGCGGAAAACAGTTTTCGAGAATGAATCagttaaaaaatcatttgaGGGTTCATACAAGAGAATATTGTCATAAATATTTGCTCTCTATATTCGATGCACTCTATGTGAATAGTAAGCAAGaagaaatcattcaaatgattcTCGTTTGCACTGGACTTGAAGTTTCAAAATATGATGAATTTTctcattatatatgttatacatGTACCGGTGAAGTAATTAAATCATACGAGTTCCGAGAAAAGTGTTGGAAAtcgcaattatttttaatggatCAATATACAGTCGATGGCAAATATGATGTGAAAAGTGAAGATGAGGATGAAATTAATAACGACTTAAATGAAAACAGTAGTATATCAGAAGAATTTGATGAATCCAATGATGTGGAAGACGGTTACAACAGTGAACAAGATTCTAAGCAGGTCAATTTTACGATCGAGTGTGATGTATTTAGTGATACGCGCAATTCAGAAGAAGAGAAACCAAaggaaattgaagaaaatttttttagacCATCAATACTACAACCAAAGCGACCTATTTTGCCCAGTAGAGATGAAGATATTCTAGATTACGTTATTTATACTGTCGATGATACATGCTTGTATGGTAAAAGATACTATTGTCTGATGTGTGATCAAGTGTATGTACGCCCGATGACAATCCGTgaccatttaattaaaattcataaaattacattaaaaaaacgCGATGGGTTTGAATGTAAAATTTGTGATAAGGTGTTCGAGCGAAAAGATCGTCTTGTTACTCATCAACGTGTTCATGCACCTGCAAAATATGTTTGTGATATATGTGGTGCAGTGTTGAAAGGCAAAGAAACACTAGCAGAACACAAACGAAGGCATACTGGCGAAAAACCTTACAAATGCCAAATATGTGATTTTCGTGCAGCTCAAAAAAGTAGCATCCAAGTACATAAAAGGGTTCATACGGGTGAAAAACCCTACAAATGTCATATTTGTGGTGTTGCATTTAAAACTTCAAGTGGGCGTGCAAATCACCGGCGACAGCATTCTGAAGAACGCCCTTATGAATGTTTGATATGTTCGAAAACGTTTAAAACTCGTGGAGTTTATCGTGGCCACATGAAAACACATGATTCAAACCAATCGATTGAGTGTGATTTTTGTCACAAAAAATTTCCACCCGGgcgaataaaatttcatttgcgACAACATTCTGCGAAACCTACATATAAATGCGATCTATGTGAAGTTATTAAATCTTACGAATATCGAGATAAATGCTGGAAATCACAATTGTTTTTGATGAATCAGTTCAAAGCCAAAGTTGCAGATGAATACTTTAGTGACAACTTAGATGATATTAAGGATGAAGAAGAAGATCTTATACTTGAAAGTGATACAAATGAAATAGATCATTTTGAGAATAATTATGAGGAAGAATTTATCGATAGTACCGATGATGAAAATCATGATGAAGTTAAAAAGGACAGTATTACTGAACCAGAACCAGTAGTCGAACAATCGAAAAAGCGTGTTGTGCCTACTTATGatgatgattttataaaatacgtTAATTATACATACGACGATACTTGTTTATACGGTAAACGTTATTTTTGCCTAAGGTGTGATCAAATATATGTGCGGCCAGTGACGATTcgtgatcatttaataaaaattcatggaATAGTGTTAGAAAAACGCGATGGATTCGAATGTATTACTTGTGGTAAAGTATTTGATCGGAAAAAACAACTAAATACTCATTTAAAAATACACGAACCTCCAAAATATACTTGTGAAATTTGTGGTGTGGTACTAAAGGGCAAAGAGACACTAGTAGAACATAAAAGAAGACATACTGGTGAAAAGCCATTCAAATGTGAAATTTGCGATTTTCGTTCAGCCCAAAAAAGGAGCATGGATATACATAGACGTGTTCACACGGGTGAAAAACCCTACAAATGCCATATTTGCGGTGTTGCATACAAAACAGCAAGCGCGCGTGCTAATCATCGTCGGAAGCACTCAGACGAACGTCCCTTTGAATGTATAGTTTCCCGATATGATACAATTTCGTGTGTTATTTGTAACGATTGCATTGATTTTATTGTGCTTGCATTCAAATATCGGAAACAATGTTGGAAATCACAAATGATTCTTATGGCACAAGTTAAAGAGAATTACGAATTATCTCGCCAAGAAgcaaaatttcaagaaattgcaATTCAACAGGAGCCGATACAAGTATCTATAATTACTAGTGATGATGAACCATCAAGCGATAATGACCTATGGTTTAAAAGAGATAATACACCAGTAGATTGTGCTAGAGGGAGTTTGCTTACAAAAGGTATAACTTCTAGGAGTTTAGTCCCGAAAGAAAAACGGCCCCCCCAACAGAAATATGATGATACTGGACTACCAATAGGTTATGGAGATATGGCCGATTACACTGAAATCATAAcggaagaaaaaaataaaactaaaatgtataaatgtagagtatgtaattttaaatatcagCGAATTGGACCACTTCGCACCCATCAAGAAAAAGTTCATCACCTTAACTTCCAAAACGACTACGAGTGCAATCAGTGcggaaaattatttgtttccCAGAAGAAACTAGACTTTCATGTTCGGGTCCACGCTGACAATCAATTTGTATGCCAATTTTGTGGTAAAAAATTTCGTCTTAATTCAGGTCTCACGATACATGTACGACGACATATGGGCGATAAACCATTTGCGTGCGATCAATGTGAATTTCGTACGATTACTAAATCCGATTTAGCCACTCATAAACGTTCGCATACCGGTGAAAAGCCATTCAAATGTTATCATTGTGACGCAGCATTTAGTACGTTCAGTCATCGGGCGAACCATGTGCGACAGCATTCAGATGAAAGGCCGTACAAGTGTATGATATGCATGACGGCATACAAATCGCGGGGCGTTTATAGATCCCATATGGATAGTCACGATCCAAAGAAATCGATTGTTTGTACTATATGTAAGCATGTCTCTAGTAATCGAAAGAATTACATGAGGCACGTGAAACACCATCGAAATAAGAacatttaa
Protein Sequence: MNNICRTCLSPNDNLIPLFEWKLVDNQILTLSKIVSLCTGLEISKFDNFSNSICALCSSALLQSFGYRKKCWDSHRILLKRQNKQKSEIVDTSAKRIDYECNVNVNDDYSLNNDYSANDHYVEVKLELNNAYEEVENNVNDRVLIDNETSLPVGPLLENETTSDGYKIVPMNDFLHYVEYKIDKSRHFGRIFVCRKCPQAYENQHYMVNHFKLAHKTIFKLEKEFKCNICPKIYGEESRYLRHLRWHKDRTCFVCTYCGVTLKCKFTLKEHVRVHTGEKPHKCDYCDFRSGKRSVITIHMRTHTGERPFICHICNKRCPTTAARATHMKTHSTELKYECNICNKKFRTPGVLSTHKLIHDPSKYKECTICGKQFSRMNQLKNHLRVHTREYCHKYLLSIFDALYVNSKQEEIIQMILVCTGLEVSKYDEFSHYICYTCTGEVIKSYEFREKCWKSQLFLMDQYTVDGKYDVKSEDEDEINNDLNENSSISEEFDESNDVEDGYNSEQDSKQVNFTIECDVFSDTRNSEEEKPKEIEENFFRPSILQPKRPILPSRDEDILDYVIYTVDDTCLYGKRYYCLMCDQVYVRPMTIRDHLIKIHKITLKKRDGFECKICDKVFERKDRLVTHQRVHAPAKYVCDICGAVLKGKETLAEHKRRHTGEKPYKCQICDFRAAQKSSIQVHKRVHTGEKPYKCHICGVAFKTSSGRANHRRQHSEERPYECLICSKTFKTRGVYRGHMKTHDSNQSIECDFCHKKFPPGRIKFHLRQHSAKPTYKCDLCEVIKSYEYRDKCWKSQLFLMNQFKAKVADEYFSDNLDDIKDEEEDLILESDTNEIDHFENNYEEEFIDSTDDENHDEVKKDSITEPEPVVEQSKKRVVPTYDDDFIKYVNYTYDDTCLYGKRYFCLRCDQIYVRPVTIRDHLIKIHGIVLEKRDGFECITCGKVFDRKKQLNTHLKIHEPPKYTCEICGVVLKGKETLVEHKRRHTGEKPFKCEICDFRSAQKRSMDIHRRVHTGEKPYKCHICGVAYKTASARANHRRKHSDERPFECIVSRYDTISCVICNDCIDFIVLAFKYRKQCWKSQMILMAQVKENYELSRQEAKFQEIAIQQEPIQVSIITSDDEPSSDNDLWFKRDNTPVDCARGSLLTKGITSRSLVPKEKRPPQQKYDDTGLPIGYGDMADYTEIITEEKNKTKMYKCRVCNFKYQRIGPLRTHQEKVHHLNFQNDYECNQCGKLFVSQKKLDFHVRVHADNQFVCQFCGKKFRLNSGLTIHVRRHMGDKPFACDQCEFRTITKSDLATHKRSHTGEKPFKCYHCDAAFSTFSHRANHVRQHSDERPYKCMICMTAYKSRGVYRSHMDSHDPKKSIVCTICKHVSSNRKNYMRHVKHHRNKNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -