Tlat022663.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tipula lateralis
Gene Symbol
-
Assembly
GCA_963932295.1
Location
OZ010737.1:186849644-186854016[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.011 1.4 10.6 0.3 2 23 119 141 118 141 0.94
2 22 0.05 6.5 8.5 6.1 1 23 149 172 149 172 0.97
3 22 0.00011 0.015 16.8 7.8 1 23 179 201 179 201 0.98
4 22 0.0014 0.18 13.4 3.4 1 23 207 229 207 229 0.99
5 22 6.9e-05 0.0089 17.5 1.4 1 23 235 257 235 257 0.98
6 22 1.6 2.1e+02 3.7 0.5 1 23 263 285 263 285 0.94
7 22 9.1e-08 1.2e-05 26.6 1.1 2 23 292 313 291 313 0.97
8 22 0.0087 1.1 10.9 0.2 2 23 387 409 386 409 0.95
9 22 7.3e-05 0.0095 17.4 2.9 1 23 417 440 417 440 0.90
10 22 2.1e-05 0.0027 19.1 3.1 1 23 447 469 447 469 0.98
11 22 0.0021 0.27 12.9 3.6 1 23 475 497 475 497 0.99
12 22 0.00029 0.037 15.6 0.2 1 23 503 525 503 525 0.99
13 22 0.13 17 7.2 0.6 1 23 531 553 531 553 0.95
14 22 2e-06 0.00025 22.4 1.2 2 23 560 581 559 581 0.97
15 22 0.0087 1.1 10.9 0.2 2 23 718 740 717 740 0.95
16 22 0.001 0.13 13.9 3.4 1 23 748 771 748 771 0.95
17 22 4.9e-06 0.00064 21.1 1.4 1 23 778 800 778 800 0.98
18 22 0.0002 0.026 16.1 1.4 1 23 806 828 806 828 0.99
19 22 1.6e-05 0.0021 19.5 0.4 1 23 834 856 834 856 0.98
20 22 0.62 80 5.1 0.5 1 23 862 884 862 884 0.95
21 22 1.1e-07 1.5e-05 26.3 0.7 2 23 891 912 890 912 0.97
22 22 0.00046 0.059 14.9 7.8 1 23 918 940 918 941 0.96

Sequence Information

Coding Sequence
ATGGAACAATCTATTTGCCGTACTTGTCTGGCCGAAACTGATggttcaatttttaaaacaatttttgtttctcAAAAAGAATTAACATTGGTTGAAATGCTTAATGACAGTATGGGAATAAAGGTGACCGAATCGGACAAGATATCTCTAAAAATATGTGATATTTGTACAGATCAAATAATCAACTTTTATGTATTTCGTGAAACATGTTTGAATTCAAACAAGTTTTTGTTACGAGAACTGGAAGACAATAAATTCGAAACGGATGttgaaaaatcaattaacaCTACAATTGTTTCTGTTGATGGATTTAATAAAGATATGCTAAACAATGAACCGACGAAAGCCTCTGTTACATGTGCATTGTGCCCTACAATTTTCTCTAGTTCGCATTTAATGATGGCACATTTGTATAAAGTTCACAGTAATCTCGAATATGCAAAATACGAGTGTGAATTCTGCAAAAAGCAAtaccacaaaattaaaaatttgcataaaCACATTAAAAATGTGCATGAATCAGATGCACCGAAATTTATATGCGATCATTGCGGACAGTCATTTAAAAATCACAAATGTTTAACCTTGCACATTCGACGGCACACTGGAGAAAAACCATATAAATGTGATTTTTGTGATTATCGTGCAACACAACAGACCTGTGTTACTGTGCATATGCGAACACATACGGGAGAACGGCCTTATAAATGTGAAATTTGTCGTAAATTATTTCGAACCTCTAGTTCTCGAGCGTCTCATATGAGAGGCCATTCAGACGAAACGCCTTATGAGTGTATAATttgtgttaaaaaatttaaattaaaaaaaatttacatggaGCATATGCTCATTCATAATCCTGATAAGTATATCGAATGTAAATATTGTGGTAAAAAGTTTGCGCGGAAAGATAATTTAAATACGCATATAAAACAGCACACTGatcaaataataaattattatgtctATCGTAAAAAATGTTTGGATTCAAACCAATACCTGTTACGACGCTTGGAAGAGAAAAAGCAAGTAAGCATTCCGATAAAATACATAGAAGACACTGAATCAAAAACTGTTTATGATGAAGTACCAATGACGACAGATTTGGAAGAAGATTCGAACGATTCTATTCCAAAAATATCcaccgaaaaaaatttaacatgtgAACTGTGTGATAGTAAATactctaataaaaatttactgcTAGACCATCTGCTGATTGTGCATAATATAGTTGAATACGAGAAATATAAATGTGACTTATGTAAAAAGTCCTATAAATCGTCAAGCGGTTTGAGGCGACATAATACAAATTATCATGCATCAGATCCTCCAAAATTTATATGCGATCACTGCGGCcaaatatttaaagttaaaGTACATTTAAACTTGCACCTTCGTCGTCATACAGGTGAAAAACCATTCAAATGTGATTTTTGTGATTATCGTGCAACGCAACAGACCTGTGTTACTGTGCATATGCGAACACATACGGGAGAAAGACCATATAAATGTGAAATTTGTGGGAAATTACTTCGAACCGCTAGTGCTCGAGCAACTCATGTCAGAACCCATTCAGACGAAACACCATACGAGTGCatagtttgttttaaaaaatttaaaaacaaagcaATTTACATGGATCATATGCTCATTCATAATCCTGATAAGTACGTCGAATGCGAatattgtagtaaaaaatttgcgcgaaaagataatttaaatacGCACCTAAAACAGCACACTGTTTTGGTTAATAAAATGGAAAGATATATGTGTCGGACGTGTTTGACCGAAACAGATGATtcgatttttaaaacaatttttcttgCTGATAAAGAGTTAGCATTAGTGGACATGCTACATGAGTGTATGGGATTAAAGGTGACGGAATCTGATGAAATATCTTTAAATATGTGTGATATTTGTACagatcaaataataaattattatgtctTTCGTAAAAAATGTTTGGATTCAAACCAATTCCTGTTACGGCGCTTGGAAGAGAAAAAGCAAGTAAGCATTCCGATAAAATACATAGAAGACACTGAATCAGAAACTGTTTATGATGAAGTACCAATGACGGCAGATTTGGAAGAAGAAGATTCGAACGATTCTATTCCAAAATTATCcaccgaaaaaaatttaacatgtgAACTGTGTGATAGTAAATactctaataaaaatttactgcTAGACCATCTGCTGATTGTGCATAATATAGTcgaatatgaaaaatatgaatGTGAGTTCTGTAAAAAGTGTTATGAGACGTCAAATGGTTTGAGGCAACATATTACAAATTATCATGCATCAGATCCTCCAAAATTCATATGCGATCACTGCGGccaaatatttaaagtaaaagtaaatttaaacttGCACCTTCGTCGTCATACAGGTGAAAAACCATTCAAATGTGATTTTTGTGATTATCGTTCAGTTCAACAAACCAGTGTCACTATTCATATGCGAACTCATACAGGAGAACGACCATATAAATGTGAAATTTGTGGTAAACTCTTTCGTACATCAAGTTCCCGAGCGATCCATCTTCGAGGTCATTCAGACGAAACACCATACGAGTGCATCGTTtgcttgaaaaaatttaaaaaaagagaTATTTACAAAGAACATATGGCTATTCATGAACCTGATAAGTATATGGAATGTAACTATTGTGGTAAAAAGTTTGCAAgaaaagataatttaaatattcacaTAAAACAGCACACTGGTGAAAAACCTTATGTATGTAAATACTGTGGCAAAGATTTCATACAAAAGCACTGTTGGAAAACTcatataaaaaatcatcataataaataa
Protein Sequence
MEQSICRTCLAETDGSIFKTIFVSQKELTLVEMLNDSMGIKVTESDKISLKICDICTDQIINFYVFRETCLNSNKFLLRELEDNKFETDVEKSINTTIVSVDGFNKDMLNNEPTKASVTCALCPTIFSSSHLMMAHLYKVHSNLEYAKYECEFCKKQYHKIKNLHKHIKNVHESDAPKFICDHCGQSFKNHKCLTLHIRRHTGEKPYKCDFCDYRATQQTCVTVHMRTHTGERPYKCEICRKLFRTSSSRASHMRGHSDETPYECIICVKKFKLKKIYMEHMLIHNPDKYIECKYCGKKFARKDNLNTHIKQHTDQIINYYVYRKKCLDSNQYLLRRLEEKKQVSIPIKYIEDTESKTVYDEVPMTTDLEEDSNDSIPKISTEKNLTCELCDSKYSNKNLLLDHLLIVHNIVEYEKYKCDLCKKSYKSSSGLRRHNTNYHASDPPKFICDHCGQIFKVKVHLNLHLRRHTGEKPFKCDFCDYRATQQTCVTVHMRTHTGERPYKCEICGKLLRTASARATHVRTHSDETPYECIVCFKKFKNKAIYMDHMLIHNPDKYVECEYCSKKFARKDNLNTHLKQHTVLVNKMERYMCRTCLTETDDSIFKTIFLADKELALVDMLHECMGLKVTESDEISLNMCDICTDQIINYYVFRKKCLDSNQFLLRRLEEKKQVSIPIKYIEDTESETVYDEVPMTADLEEEDSNDSIPKLSTEKNLTCELCDSKYSNKNLLLDHLLIVHNIVEYEKYECEFCKKCYETSNGLRQHITNYHASDPPKFICDHCGQIFKVKVNLNLHLRRHTGEKPFKCDFCDYRSVQQTSVTIHMRTHTGERPYKCEICGKLFRTSSSRAIHLRGHSDETPYECIVCLKKFKKRDIYKEHMAIHEPDKYMECNYCGKKFARKDNLNIHIKQHTGEKPYVCKYCGKDFIQKHCWKTHIKNHHNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-