Basic Information

Insect: Tipula lateralis
Gene Symbol: -
Assembly: GCA_963932295.1
Location: OZ010737.1:9359962-9365788[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 33 9.9e-06 0.0013 20.2 0.4 3 23 160 180 158 180 0.96

2 33 0.11 14 7.4 0.7 2 23 183 201 182 201 0.92

3 33 2.8e-05 0.0037 18.7 1.3 1 23 207 229 207 229 0.98

4 33 0.00033 0.043 15.4 3.7 1 23 235 257 235 257 0.98

5 33 0.00047 0.06 14.9 3.4 2 23 266 287 265 287 0.98

6 33 5.6e-06 0.00073 20.9 1.2 3 23 295 315 294 315 0.99

7 33 4.6e-07 6e-05 24.3 0.6 1 23 321 343 321 343 0.97

8 33 0.001 0.13 13.8 2.8 1 23 349 371 349 371 0.96

9 33 0.00076 0.099 14.2 2.6 2 23 565 586 564 586 0.97

10 33 0.055 7.1 8.4 0.8 5 23 589 607 588 607 0.93

11 33 0.0034 0.44 12.2 3.5 1 23 613 635 613 635 0.97

12 33 3e-06 0.00038 21.8 7.4 1 23 641 663 641 663 0.98

13 33 0.03 3.9 9.2 1.1 2 23 672 693 671 693 0.96

14 33 3.5e-05 0.0045 18.4 1.1 2 23 700 721 699 721 0.97

15 33 1.9e-07 2.5e-05 25.6 0.2 1 23 727 749 727 749 0.98

16 33 0.051 6.6 8.5 0.3 1 13 755 767 755 769 0.89

17 33 0.004 0.51 12.0 0.9 2 23 851 872 850 872 0.96

18 33 0.18 23 6.8 0.9 5 23 875 893 874 893 0.92

19 33 0.0073 0.94 11.1 4.5 1 23 899 921 899 921 0.97

20 33 2.1e-06 0.00027 22.3 2.4 1 23 927 949 927 949 0.99

21 33 0.0001 0.013 17.0 3.6 2 23 958 979 957 979 0.97

22 33 3.3e-05 0.0043 18.5 0.6 1 23 985 1007 985 1007 0.98

23 33 1.6e-06 0.0002 22.7 1.0 1 23 1013 1035 1013 1035 0.98

24 33 0.067 8.6 8.1 0.5 1 13 1041 1053 1041 1055 0.89

25 33 0.00073 0.094 14.3 1.0 2 23 1148 1169 1147 1169 0.96

26 33 0.21 28 6.5 1.7 5 23 1172 1190 1171 1190 0.85

27 33 0.74 96 4.8 5.0 1 23 1196 1218 1196 1218 0.96

28 33 0.00034 0.044 15.3 5.5 1 23 1224 1246 1224 1246 0.97

29 33 0.00098 0.13 13.9 0.2 2 23 1255 1276 1254 1276 0.97

30 33 0.018 2.4 9.9 0.2 5 23 1286 1304 1284 1304 0.95

31 33 1.2e-05 0.0016 19.9 3.1 1 23 1310 1332 1310 1332 0.99

32 33 0.00058 0.075 14.6 3.8 1 23 1338 1360 1338 1360 0.97

33 33 2.9e-05 0.0037 18.7 2.5 1 23 1366 1388 1366 1388 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	33	9.9e-06	0.0013	20.2	0.4	3	23	160	180	158	180	0.96
2	33	0.11	14	7.4	0.7	2	23	183	201	182	201	0.92
3	33	2.8e-05	0.0037	18.7	1.3	1	23	207	229	207	229	0.98
4	33	0.00033	0.043	15.4	3.7	1	23	235	257	235	257	0.98
5	33	0.00047	0.06	14.9	3.4	2	23	266	287	265	287	0.98
6	33	5.6e-06	0.00073	20.9	1.2	3	23	295	315	294	315	0.99
7	33	4.6e-07	6e-05	24.3	0.6	1	23	321	343	321	343	0.97
8	33	0.001	0.13	13.8	2.8	1	23	349	371	349	371	0.96
9	33	0.00076	0.099	14.2	2.6	2	23	565	586	564	586	0.97
10	33	0.055	7.1	8.4	0.8	5	23	589	607	588	607	0.93
11	33	0.0034	0.44	12.2	3.5	1	23	613	635	613	635	0.97
12	33	3e-06	0.00038	21.8	7.4	1	23	641	663	641	663	0.98
13	33	0.03	3.9	9.2	1.1	2	23	672	693	671	693	0.96
14	33	3.5e-05	0.0045	18.4	1.1	2	23	700	721	699	721	0.97
15	33	1.9e-07	2.5e-05	25.6	0.2	1	23	727	749	727	749	0.98
16	33	0.051	6.6	8.5	0.3	1	13	755	767	755	769	0.89
17	33	0.004	0.51	12.0	0.9	2	23	851	872	850	872	0.96
18	33	0.18	23	6.8	0.9	5	23	875	893	874	893	0.92
19	33	0.0073	0.94	11.1	4.5	1	23	899	921	899	921	0.97
20	33	2.1e-06	0.00027	22.3	2.4	1	23	927	949	927	949	0.99
21	33	0.0001	0.013	17.0	3.6	2	23	958	979	957	979	0.97
22	33	3.3e-05	0.0043	18.5	0.6	1	23	985	1007	985	1007	0.98
23	33	1.6e-06	0.0002	22.7	1.0	1	23	1013	1035	1013	1035	0.98
24	33	0.067	8.6	8.1	0.5	1	13	1041	1053	1041	1055	0.89
25	33	0.00073	0.094	14.3	1.0	2	23	1148	1169	1147	1169	0.96
26	33	0.21	28	6.5	1.7	5	23	1172	1190	1171	1190	0.85
27	33	0.74	96	4.8	5.0	1	23	1196	1218	1196	1218	0.96
28	33	0.00034	0.044	15.3	5.5	1	23	1224	1246	1224	1246	0.97
29	33	0.00098	0.13	13.9	0.2	2	23	1255	1276	1254	1276	0.97
30	33	0.018	2.4	9.9	0.2	5	23	1286	1304	1284	1304	0.95
31	33	1.2e-05	0.0016	19.9	3.1	1	23	1310	1332	1310	1332	0.99
32	33	0.00058	0.075	14.6	3.8	1	23	1338	1360	1338	1360	0.97
33	33	2.9e-05	0.0037	18.7	2.5	1	23	1366	1388	1366	1388	0.99

Sequence Information

Coding Sequence: ATGGCAATTTATACATTGCCCCAGCGAATTTTTATTGTGAAGCATTACTATCAATCTGGAAATTCGACAAAAAACGTCATTACCgaatttccaaataaatttgtCAATGACGATTTACCTAGTGAAGATGAAATACATAATTTGGTGCAGCTTTTCGAGGAGTTTGGTTGTGTTTATGGACTGTGTAAATCAGTTGCTGAATCTGAATCTGATATAAATTTTAGCAATAGATCAACGGTGGAAAATGTAGAGGTTAAAGTTGACCCAGATATGTTCGGAGAAGAATCCAATATGATTGACAGTTTGGAGGgaattaaagaaaatgaaatagaatCGGGAAATGAAAATTCTGAAGTAGGAGATAATTCTGAAAGTAATATATCTTTGTCTGATTCCGAAAATAGTGACGGGGAACAGAGCTTTACAAAAGCAAACAATACTGTAAGGAAACCTACACGAGGTGGTGTGCGTATAAATTGTGAGGACTGTGATAAAGTATTCAACCGTCAGGTACTATATGAACGCCATCGTCGTGCTCATTTAAATACATGTACAATATGTAATAAAAGAGTTGTTAATTTAAAAGCTCATATGCAAATGCACGATGGCATTTTACCATACGAGTGTGCAATATGCCAGcaacgatttaaatttaatgatcgtTTGAAAAGACACATGGCCACCCACTCTGAGATGCGCCCATTTAAATGTGAAATATGTCAAAACTGTTTTAAAACGAAAGATCGTCTACGTGAGCATGTTAAAATCCATATGCCGATGGAAGAACGACCAAAAAAATGTCACATGTGTGAAAAACGATTTTTGAATAATGTTGAGCTAAATCGACATATAAGATCCCATACGGGAGAGAAACCAACTTTGTGCAATGAGTGTGGAAAAGGTTTTAGAACtctttatcaattaaatatgcATAAACGCACTCACACTGGAGAAAAGCCACATAGTTGTGATATTTGTGGAAAAACATTTTCTCGTAATGCTGGTTTGATTATCCACCAACGGCTACATACAGGTGAAAGGCCGTATAAATGTCGGTACTGTGATAAATCGTTTACCGATTCTGGGGGACGTAAAATGCATGAACATGTACATCTCGATGACCGCCCATATAAATGCATCTTGTGTAATTCAATAGATAAAGTTCAAACTGAATTTCCTACAAAATTTGTTACAAAAGATTCGCcaacaaatgaaaatgtgatTGAATTAATCAGTTTGTTTGAAGAATTTGGAAGAGTGTGTGAATGTGGATGCGGAAGGGAAGGCGACTATAATCCTATACGAAACTTGaaAGGCGGTATATATGAACTCACAGTTAAAACGGAAGACAATATTGAAGATAAAGTAAAGTTAGAACATGATGATGAATCAAATCTCTTGAAGGATTCGCAAGAATCTAACGATGATTCGGAAGAAGATGAATTTAAGTTAAAACATGATGATGAATCAAATCCCCTGAAGGATTCGCAAGCATCTAACGTTGATTCTGAAGAAGAAGATGAAGTAAAGTTAAAACATGATGATGAATCAACTCTCCTGAAAGATTCGCAATCATCAAATGATGATTCTGAAGAAGAAGACAGTACAAATGAACGAACGAGTGATACAGAAAATAAtgtcaaattgaaaaaaatatcaaataggAATACGAAAAAAGTTCGTCTggacttaaaatgtaaacaatgcGATCGTCAATTCATGAGGCGTGATAAATTCCGTGCCCACTTGGAGAAACATGAAAAAGAATGTAAAATATGTGGAAAGCGACCTCGAAATCTTGATCAACACATGCGATATCACACTGGCGAAAAAGGTTTTGTATGCTATGTATGTGGTCTTCAATGTTTTAAACCTGACCAATTACATTCTCATATGCGATCACACCAAAAAGAACGACCGTTCTCTTGTACGACATGTGATAAGGGTTTTAAAACCAAACATCATTTAAATCGACATATTAAAACTCATGTACCATTTGATAAACGGCCAATACAATGTGATATGTGTGATAAAAGGTTTTTGTTCCAACGAGAGtataacatacataaaaaaattcacaCGGGTGAAAGAACTTGTGTCTGCAAAGAGTGTGGTTTGGGATTTACTAGTAATTGGTCGCTGAAAATGCATGCTCGAACTCATACTGGTGAAAAGCCGTTTGAATGTGAATACTGTGATAAGGCATTTAGTCGATCGGGTAGTTTGAACATTCATGTCCGAATACATACCGGAGAAAAGCCATACAAATGCCAGATTTGTAATAAAGCATTTTATGATGCTGGTTCGCGAGGTCATACTGAAATATCAGAATTCGGTATTAAAAAAGAAGAAACAGACATTGATAATGAGATAAAACTAGAAGAGGGCaatgaaattgaatttcaaaatgaGGTTACTCAAAATTTATCTCAAGAAGAATCAAGCGACGATTTTCAAGAAGATAGTGACAATGAGCAGATAAATAATGCCGAAGATAATGATACCGAAAAAGaagttttgaatgaaaataaaaagttccGTAAAGATTTGAAATGCAAAGTTTGTGATCGCCAATTTATGCGAGCCGATCGATTTCGTATTCATGTTGAAAAACATGAGAATGAATGTAAAATATGCGGCAAACGGCCTCGTAATTTTGATCAACATATGCGATATCACACTGGCGAAAAAGGTTTTGTTTGCTACGTGTGTGGTTTACAATGTTTTAAATCTGACCAATTACATTCTCATATGCGATCACATCAACAGGAACGACCTTTTACGTGCGATACGTGTAACAAAGGTTTTAAATCAAAGCAAGATTTAAATCGACATGTTAAAACTCATGTTCCATTTGATAAACGACCAATACAGTGTGAGATGTGTGATAAACGATTTTGTTTCAAGCgtgaatataatatacatatgaaAATGCACACGGGTGAAAAGAGGTATTTCTGCAAAGAGTGTGATTTGGGCTTTACTACTAATTGGGCATTAAAAATGCATGAACGAACACATACTGGGGAAAAACCATTTGAGTGTGTTTATTGTCATAAGGCGTTTAGTCGATCAGGCAGCTTAAACATTCACGTTCGAATACACACAGGAGAAAAGCCATACAGTTGTCAAATTTGCAATAAAACGTTTTATGATGCTGGATCGCGGGGGAATGAGCAACAAGATATTGAAATACCGGTTAagaaaatccaaaatcgaaGAGAACCGTTGGATTTTAAACCTGGTATAAAACCGGAAACTCAAACGATTATTGAAAACTTATTTGACGATGACGAGGCTAGTACTGATACCAAAGATGAGGAAGAAGATTCCTTTGAAGAATATGACGAAGATCAGGATTTAATTAATGAGCCACAAATTCTTGATAGTGacatcaaaacaaacaaaccggACCAGATTTCTAAAGTAAAATTGTCTTTAAAATgtgaattttgtgataaaatattcaatCGCCGTGCACGTTACGATCGCCATATGAACGGTCACAAAAATACGTGTCAAATATGTAGGAAACGGGTACGTGATTTAAAGGTACATATGCGAAGGCATACGGGTGAAAAGTCTTATCAATGTTCACAATGTGGCGTACAATTTCATCGTTATGACCGTTTACGTTGTCATATGGTTTCACATTCTGATGAACGACCGTTTGCTTGTGAAAAATGTAGCAAAGCGTTTAAGACTAGGAAACATTTACATGAACACGCAAAGACTCATTTATCAGCAGAAGATCGGCCCATTAAGTGCGAAGTATGCGgaaaaggatttttatataatgtcgATTTGAAAAAGCATAGTAGAATACATACCGGTGAAAAACCATCATTGTGTATAGTGTGTGGTAAAAGCTTTGCTTCGAATGAAATATTGAAGGTGCATAAAAGGATTCACACTGGTGAAAAACCATATCAATGTCCATACTGTGATGAAAAATTTAGCCGATTTGGATCACTTCACACGCACAAAAGAATTCATACTGGTgaaaaaccttacaaatgtaATTATTGTGATAAGACATTTTACGATTCAGGATCTCGTCGATCACATGAACATGTTCATATTGGTGATTTTCCATATAAATGTTTACTTTGTGATAGAGCCTATAATCATTTGAGTAGTCTTAAATCGCATATGAATTCTCATAGAGACGTTACATAG
Protein Sequence: MAIYTLPQRIFIVKHYYQSGNSTKNVITEFPNKFVNDDLPSEDEIHNLVQLFEEFGCVYGLCKSVAESESDINFSNRSTVENVEVKVDPDMFGEESNMIDSLEGIKENEIESGNENSEVGDNSESNISLSDSENSDGEQSFTKANNTVRKPTRGGVRINCEDCDKVFNRQVLYERHRRAHLNTCTICNKRVVNLKAHMQMHDGILPYECAICQQRFKFNDRLKRHMATHSEMRPFKCEICQNCFKTKDRLREHVKIHMPMEERPKKCHMCEKRFLNNVELNRHIRSHTGEKPTLCNECGKGFRTLYQLNMHKRTHTGEKPHSCDICGKTFSRNAGLIIHQRLHTGERPYKCRYCDKSFTDSGGRKMHEHVHLDDRPYKCILCNSIDKVQTEFPTKFVTKDSPTNENVIELISLFEEFGRVCECGCGREGDYNPIRNLKGGIYELTVKTEDNIEDKVKLEHDDESNLLKDSQESNDDSEEDEFKLKHDDESNPLKDSQASNVDSEEEDEVKLKHDDESTLLKDSQSSNDDSEEEDSTNERTSDTENNVKLKKISNRNTKKVRLDLKCKQCDRQFMRRDKFRAHLEKHEKECKICGKRPRNLDQHMRYHTGEKGFVCYVCGLQCFKPDQLHSHMRSHQKERPFSCTTCDKGFKTKHHLNRHIKTHVPFDKRPIQCDMCDKRFLFQREYNIHKKIHTGERTCVCKECGLGFTSNWSLKMHARTHTGEKPFECEYCDKAFSRSGSLNIHVRIHTGEKPYKCQICNKAFYDAGSRGHTEISEFGIKKEETDIDNEIKLEEGNEIEFQNEVTQNLSQEESSDDFQEDSDNEQINNAEDNDTEKEVLNENKKFRKDLKCKVCDRQFMRADRFRIHVEKHENECKICGKRPRNFDQHMRYHTGEKGFVCYVCGLQCFKSDQLHSHMRSHQQERPFTCDTCNKGFKSKQDLNRHVKTHVPFDKRPIQCEMCDKRFCFKREYNIHMKMHTGEKRYFCKECDLGFTTNWALKMHERTHTGEKPFECVYCHKAFSRSGSLNIHVRIHTGEKPYSCQICNKTFYDAGSRGNEQQDIEIPVKKIQNRREPLDFKPGIKPETQTIIENLFDDDEASTDTKDEEEDSFEEYDEDQDLINEPQILDSDIKTNKPDQISKVKLSLKCEFCDKIFNRRARYDRHMNGHKNTCQICRKRVRDLKVHMRRHTGEKSYQCSQCGVQFHRYDRLRCHMVSHSDERPFACEKCSKAFKTRKHLHEHAKTHLSAEDRPIKCEVCGKGFLYNVDLKKHSRIHTGEKPSLCIVCGKSFASNEILKVHKRIHTGEKPYQCPYCDEKFSRFGSLHTHKRIHTGEKPYKCNYCDKTFYDSGSRRSHEHVHIGDFPYKCLLCDRAYNHLSSLKSHMNSHRDVT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -