Tlat032745.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- bab1
- Assembly
- GCA_963932295.1
- Location
- OZ010738.1:185870573-185872257[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.8e-06 0.009 16.8 0.0 11 41 352 382 350 385 0.85 2 2 0.061 70 4.3 0.0 13 24 415 426 411 427 0.86
Sequence Information
- Coding Sequence
- ATGCTACCACAACAGTATTGTCTACGATGGAAATATCATCATAGTAATTTACAGACAATGTTTTCACAACTATTGGATCGAGGTTGCTTTTGTGACGTCACACTAGCGTGCGAGGGTCAAACTCTAAAAGCTCACCGTGTAGTACTGTGTGCTTGCAGTACATATTTTGATTCGATATTAACAAATTGTTGTTCAGAAAAAGATCCGATAATCATAATGCGTGACGCCAAATTTACcgatataaaatgtttaattgaatttatgtataaagGTGAGATTAATGTCGATCATGGAAGTTTGGCGTCGTTATTAAAAACAGctgaagaattaaaaataaaaggacTAGCAGAAGTTTCGTGGCGTGATGAAGAGGGCCATCATAGTTCGCAAACAAGTCAAACAAAAGATGATAGTCAATGTGGTATAACCAACAGCTTGGATAATAATTCTGAAACATTTCTCAAAGATGAAAAAAACATTCCCATTTTAACTCCAATAAATACAGTTTTAGCGAAAGATCCTATTAATGTACAACATAGTCTGCCGATTAAAAAGAAACGGGGACGTCCACCTTTAGATGCTGATTCGGTATACGAATCATATAATAAGTCAATTAAACTATCAAAACCGAAATCTAATCATGTAACTAACACAACGTTTGCAGACAGTGCTCACTTAGTAACGGTTCTAATGGATGAAAATTCTAAAGATGGCAATGCAGTGTCTAAAACTAATCTATTAACTGAAAACAATAATGTATCATGGGCCGAACAAAATTTAACCACACACAtggattatgatgatgatgagccTACACCAAATATAATCCCAAAAATGGAACGTCCAGAAACGCCGTACGATAGCATTCCCCATCCTGATGATTTATCATCTCCTAATAGTCCGTTGGATACGGGCTCATCAATATCCCAACCAGTTTTTTTGACACAACAAGAAATCGAAGAATGGAAAGATGTCATAAAAATGAACGATTATTTAACCAGAGGTCGAAGGCCGCAGTTTTGGGAAGAACCATTTTGTAAGCGAGTCATGGatgctataaaaaataaaaatttggaaatgaaAAAAGCCGCACAAATTTTGGGAGTTTCTTATGGAACTCTATATGGACGATACCGAGAAACATATGGTTGTTTAAAACATCCGTATAGAGGACCATTTATGGTGTCTCGTCTTAGAGAATATTTTACAGATCCTGCGCcaactgaaattttaaatttacttcaaaaagGAGGATTATCATTGCAACAAGCGGCCGAATTAATGAATTCGTCGACGAAAAATGATTGGCTGTCTTATGAGGAATCGGAAAAAGATCATATCGATGTCGATATTGATTCATCCGAAGATATAGATCATAAGGATAACGATgaagacaacaataaagaaaacGATAACGAGAAAACTAATGAAATTTGTGAGAAACAGGATAAAGGTATTAAACAGGGACTTATTTTACCAAATCATCCCGAAGTAAGTTTGATAAATGTTAAAAAGACTTCTAACAATAATGATATCAAAACGGAGACTAAATCTACGTAA
- Protein Sequence
- MLPQQYCLRWKYHHSNLQTMFSQLLDRGCFCDVTLACEGQTLKAHRVVLCACSTYFDSILTNCCSEKDPIIIMRDAKFTDIKCLIEFMYKGEINVDHGSLASLLKTAEELKIKGLAEVSWRDEEGHHSSQTSQTKDDSQCGITNSLDNNSETFLKDEKNIPILTPINTVLAKDPINVQHSLPIKKKRGRPPLDADSVYESYNKSIKLSKPKSNHVTNTTFADSAHLVTVLMDENSKDGNAVSKTNLLTENNNVSWAEQNLTTHMDYDDDEPTPNIIPKMERPETPYDSIPHPDDLSSPNSPLDTGSSISQPVFLTQQEIEEWKDVIKMNDYLTRGRRPQFWEEPFCKRVMDAIKNKNLEMKKAAQILGVSYGTLYGRYRETYGCLKHPYRGPFMVSRLREYFTDPAPTEILNLLQKGGLSLQQAAELMNSSTKNDWLSYEESEKDHIDVDIDSSEDIDHKDNDEDNNKENDNEKTNEICEKQDKGIKQGLILPNHPEVSLINVKKTSNNNDIKTETKST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01054446;
- 90% Identity
- iTF_01457496;
- 80% Identity
- iTF_01457496;