Tlat002069.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- -
- Assembly
- GCA_963932295.1
- Location
- CAWVQQ010000634.1:275443-277797[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.7e-08 4.3e-05 24.2 0.0 1 35 9 44 9 45 0.94
Sequence Information
- Coding Sequence
- ATGCCACGTAAAAAGCACACGTATGACGAGGATCAACTTCAAAAGGTTCTCGATGAGGTGAGAGCgggaaaaatttcgaaaaagtcAGCAGCAAAACTTTATAATATACCCAGGTCAACAATCCAATTTAGATTGGGTCCAAATTTCAACAAAGTCCGGCCAGGTCCAGCCACAGTTTTAACTGAAGTAGAAGAGCTAGCGATATTAGACTGGGTAAAAGTATCACAAAAAAAAGGTTTTCCTAAACGGAAGGAGGATATTCTTCATGCAGTAAAGGATTTCCTAGAGGAAAATAACAGGGATCACCCCTTTGGTGAAGATAAATTACCGGGAAAAGGATGGTTCCAATCATTTTTAAAACGACATCCCTCCTTATCTCTCCGAGTACCAGATCCGGTATCATCCGCCAGTGCTAATGTCGCAGCTACTGACATATACAAATGGTTCGActctattgaaaattatttattggaaaacaactatttttcaattttgagtGACCCTACTCGGATATTTAATGGAGATGAAACTAATTTCTTGTTGTGCCCTAAGTCCAAAAGTGTTTTAGCAGCTAAAGGCTCCAAAAATATATACGAAGTTGATAGAGGTTTGGCAAAATCAAATCTTACCGTCATGTTTTCGTTCTCCGCGTCAGGTATCATGACCCCACCAATGATTATTTACCCATACAAACGGATGCGAGAAGAAATTAGAAGCACTGTGCCAGAAACTTGGGGCTATGGGATTAGTGAAAACGGATGGATGaccaaacaaacattttatgaatatatttcgAAAGTTTTTTATCCGTATCTTCGGGATATCAATACCAAATTCCCAATTATTTACTTTGTAGATGGGCACAGCACTCATCTTACTTTACAAGTTAGTCAGCTTTGCGTCAAATTGGGTATTATATTAATTGCTCTTCATGCTAACTCAACAAGGATTATACAACCAGCAGATGTAGCAGCTTTTAAACCGCTGAAAAATACATGGAATAATTCAGTGCTAGAATGGAGGCGTAAAAACCCCAACAAGAATCTCACCAGGGACTTATTTGGACCACTTTTAAAAGAAGTTTTTGACAAATCAGTGTCTTCTGATATTTTGCAGAAGGGACTTAAAGCATGTGGCCTTTTTCCTTGGAATAAGTATGCCATAAATACGTCCAAGTGCCTGGGTAGATCTTCAGAAGCGCTTTCTCAAACTATTCAAAATTTAGGTAACACAGATGTTTTTCGTGAATGTTGTACTATTTTGGGAACCGAAAAAGTGGCAATGTTGGAAACATTCAACAACACTGCAGATGTTGAAAATAAATCGGATGATTTTAAAgccttatataatatttataaatatctcAAGAATAATCCATTCAAAAGAAACATGGAAGGAAATGTGGCCAACCAAGCTTCGCCGACAGATTTTTCACCACCCTCACATGGCATCAATGACATTGATATTGCCAGTATTAATGAATTTGTTTACTTTAACCatgttattgaaaatataaataatgacgAAGAAATAGGAATACTCAACGGGTACGAATCCACATGTACTTCCTCCAGTATTCTTCAATTAGATCCAATTATAACCGGTGATGAGAACATAGATATCTCAGAAAAGAACGAAAATAACTCTGAATTTGTCATTCCTGTCTTTACTAAATTAAAGGCACAAACACAGCCATATACACCTATGGAGGATATATTAGACTGGCCGCAAACACCATTAAGAAAGGGTTCAAAAGTACAAAATGACAAAAAGAGCTTTGTCATTACCAATTCCTTATGGATAAAAGATGAAGAAAGGCGAAaggaagaaaaaagaaaaatcgaatATCTCAAAGAAGAGCGAAAAACTGAaagacttaaaaaaaagtcacttaaagaaaatgaaaaaataaaaaacaggaCTCTAAAGGAATCAAAACTCAGAAAAaaacctcaaaaaaaaattaaaaaaccattacTCACAGCAAAAAAGGCTCTAGAACCAAAATCGCACACAGTAATATCAGGTGCTTTAGAGTCATTAGTAATACAATACTGttcaccaacaaaaaatattgaagaaatggAAGAAAAATCCAGTCTTCCACCACACGTGCGAAAACTCTTTTCAcccgaaaaaaatttggatcGACTCGGAAGAAATTCCGTTTGCCGTGGTAAAATGTGTTATGAATGCACAAAATTTATGTCAGGAGATATGAACTCTGAAGCCTGTGGCATCAGATGTACAAATTGTACAAGAGAATACCACGTAGCATGTTTGAAGGTTTTAAAATGCAAATATCTTCCGACCTTCGTCTGTAAATCATGTTTAACAAAGACTGAAGACATTTAG
- Protein Sequence
- MPRKKHTYDEDQLQKVLDEVRAGKISKKSAAKLYNIPRSTIQFRLGPNFNKVRPGPATVLTEVEELAILDWVKVSQKKGFPKRKEDILHAVKDFLEENNRDHPFGEDKLPGKGWFQSFLKRHPSLSLRVPDPVSSASANVAATDIYKWFDSIENYLLENNYFSILSDPTRIFNGDETNFLLCPKSKSVLAAKGSKNIYEVDRGLAKSNLTVMFSFSASGIMTPPMIIYPYKRMREEIRSTVPETWGYGISENGWMTKQTFYEYISKVFYPYLRDINTKFPIIYFVDGHSTHLTLQVSQLCVKLGIILIALHANSTRIIQPADVAAFKPLKNTWNNSVLEWRRKNPNKNLTRDLFGPLLKEVFDKSVSSDILQKGLKACGLFPWNKYAINTSKCLGRSSEALSQTIQNLGNTDVFRECCTILGTEKVAMLETFNNTADVENKSDDFKALYNIYKYLKNNPFKRNMEGNVANQASPTDFSPPSHGINDIDIASINEFVYFNHVIENINNDEEIGILNGYESTCTSSSILQLDPIITGDENIDISEKNENNSEFVIPVFTKLKAQTQPYTPMEDILDWPQTPLRKGSKVQNDKKSFVITNSLWIKDEERRKEEKRKIEYLKEERKTERLKKKSLKENEKIKNRTLKESKLRKKPQKKIKKPLLTAKKALEPKSHTVISGALESLVIQYCSPTKNIEEMEEKSSLPPHVRKLFSPEKNLDRLGRNSVCRGKMCYECTKFMSGDMNSEACGIRCTNCTREYHVACLKVLKCKYLPTFVCKSCLTKTEDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01457262;
- 90% Identity
- -
- 80% Identity
- -