Tlat014484.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- bab2
- Assembly
- GCA_963932295.1
- Location
- OZ010737.1:39709232-39711360[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6.5e-12 7.5e-09 36.2 0.0 2 45 404 447 403 447 0.92 2 2 0.48 5.5e+02 1.5 0.6 4 20 537 552 536 552 0.91
Sequence Information
- Coding Sequence
- ATGAGTAACAGCGAAGGACAAACCTATTGTCTCCGATGGAACAATCACAAATCAAATTTGGTCGAGATACTCGATGCACTGATCAAAATGGAATCGTACGTCGATTGTACAATATACGTCGACGATCATGTACAGTTTAAAGCGCATCGTGTTGTGCTCGCAGCTAATTCGCCATATTTTCAAACGATACTGCAAGGTGTACCGATGGATCACTGTACAATATTATTTCCTGAAGTGCAGGCATTTGAAATGCGTGCTCTACTCGAGTACATGTATACGGGTGAAGTGAACGTGACACAATCGCAGATACCTAGAATTATGAAAATAGCACGTGATTTAGAAGTTAAGGGACTATACGATATGGCCGATTTAAAAGACTTGAAAGATGAACCTCAACATTTTAGTGGAATAAAATCTTCATCGACTAAtaatagtataaataataataacaacagtagtaatagtaataataatcaccatcataataataatagtaattcgTCGACATCGTCCACAACCCATTCcactagtaataataataataataatagtagtaatagtaataatcatCACACGAATAGTAATAATACTACaccaaatcatcatcatcatcaatcatcGCCCGTCATATCTACCTCGACGAATATAACACAGGCCCAAAGTAGTTCATCATCACCGCCATATAGTTATAAATCACCATACTCGAGTTTGTATTCGCGATCACCTGTGCCTACAGGCGCCTCCGATCGTTTGCCCCAATGGCCACATTTACCGCCCACCTTGCCCACACAACATTTACACAATGCCGCCGCCGCTGCCATGCTTTCGTCCGTCTACGACTCGGGCTCCGACATGAATCCACTCAAACGCAAAAAACTATCGTCAATATCGAGTATGCTAATGTCGCGCGATACCCCAATTCTACGCAATGTGCTAGCCCAGCCAAATGTTGCCGATTCATCACAACCTGTGCCGCTTGTTTGCCAACCGTTGGACACGGATCGTAGCGAACGACATAATTCGCATTCGAACGGTACTGATTACTCGGATAAGAAAATTAAGTACGAGGAACCTCATTCGCCATACACAGATAAATCGTTCGAAGACGATTCAATGGATCCGGGACAATCGTTTAGCGGATCCGATTCGAGAATAGCATCGTATGTGCCACAACAGAAACCCGAATGGAAACGATACAAGCAATATACACGAAACGATATACTATCGGCGATCGATTGTGTTCGCAACGGAATGTCGGCATTGCAGGCATCGCGCAAATTTGGTGTCCCATCGCGCACCCTATACGACAAAGTGAAAAAATTGGGCATTACAACCGGCCGCCCAATGAATCGTAGCATGAAACGTAGCCCAAACCATGGCCATGGTAATAACAGCCAGGCTGGGTTTCCGTACGGTTTGAGCGGCACAAATAGCCCGTTTGGTCATCATCAACTCGAAAATCCGTCCCAATCGAATGACAACGATCGCGATCATCTACAACCGACCATACCTCATCCGGCTGCCGCCCTATTGGACGCCACCTTTTTACAGCAAGCACTCGAAGCGCGTGGCGGCGATATAGCGGGACGTGAAGCTCTTCACGCAATGGCATTCGCAGCTGCTGCTCATGCCGCCGTCAATGGTATATCGACAAGTCCGGGTACCCATGGTACAGCACGATCGCCCAGTCCCGGTATACTAATGAAATATGTTCGACCATCGACACCGTCGCCAATGAGTGGCGGGCCACAACATCATCGATCGCATCACGGTAGCGATATGTTGATGAAGGACGATATTGTTGGCGACGACGATCATGTCGAAGATTTGTCAATGTCGAAAAAAGATTCGTCGGATCGATCGACAACGTCGCCACAATCGCATCGAAGTGCTAGTCCGCCATTGACGCCGCCGTCCCAAATGCATGTACACCAACAGCTAGGGGTTATCGTTCCACCAATGACTAAAGTTCCCACCCCGAAGCACGACGATTTCATCAACAAGGATGTTAAAAGGGAAATCATAACCACCGAAGACGATTCGAGAGATTAA
- Protein Sequence
- MSNSEGQTYCLRWNNHKSNLVEILDALIKMESYVDCTIYVDDHVQFKAHRVVLAANSPYFQTILQGVPMDHCTILFPEVQAFEMRALLEYMYTGEVNVTQSQIPRIMKIARDLEVKGLYDMADLKDLKDEPQHFSGIKSSSTNNSINNNNNSSNSNNNHHHNNNSNSSTSSTTHSTSNNNNNNSSNSNNHHTNSNNTTPNHHHHQSSPVISTSTNITQAQSSSSSPPYSYKSPYSSLYSRSPVPTGASDRLPQWPHLPPTLPTQHLHNAAAAAMLSSVYDSGSDMNPLKRKKLSSISSMLMSRDTPILRNVLAQPNVADSSQPVPLVCQPLDTDRSERHNSHSNGTDYSDKKIKYEEPHSPYTDKSFEDDSMDPGQSFSGSDSRIASYVPQQKPEWKRYKQYTRNDILSAIDCVRNGMSALQASRKFGVPSRTLYDKVKKLGITTGRPMNRSMKRSPNHGHGNNSQAGFPYGLSGTNSPFGHHQLENPSQSNDNDRDHLQPTIPHPAAALLDATFLQQALEARGGDIAGREALHAMAFAAAAHAAVNGISTSPGTHGTARSPSPGILMKYVRPSTPSPMSGGPQHHRSHHGSDMLMKDDIVGDDDHVEDLSMSKKDSSDRSTTSPQSHRSASPPLTPPSQMHVHQQLGVIVPPMTKVPTPKHDDFINKDVKREIITTEDDSRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01454973;
- 90% Identity
- iTF_01456157;
- 80% Identity
- iTF_01457506;