Tlat020222.1
Basic Information
- Insect
- Tipula lateralis
- Gene Symbol
- -
- Assembly
- GCA_963932295.1
- Location
- OZ010737.1:148506438-148507093[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.6e-12 4.2e-09 37.1 0.0 2 41 14 52 13 54 0.93 2 2 7.1 8.2e+03 -2.3 0.0 28 38 86 96 83 97 0.82
Sequence Information
- Coding Sequence
- ATGGCAGCCAACAATTTAGTAAGAAGTAAAGAAAAATCGAACGATGTCTTAAAAAATGCCCTAGAAGCTGTCAATAATGGTATGACTGTTCACACGGCCAGCAAAACCTTCGAAGTGCCCAAAACAACTTTATATAACCACTTTAAAAAGCATCTAAGTTGTGATGTTAAACAGGGGGCACCAACCATTTTTACTAAAGAACAGGAGGGTCATTTGTGCTCATGGATTGACCATACGGCAAAAACTGGATTTCCCATATCTAAGGAAACTTTGCTAGATTGTGTACAATTACTTGCTAAAGATTTGCAGATTGCACACAAATTTAAAGATGGCAGACctgATTGCCACTGGTACGAAGGCTTCTTGAAAAGAAACCCTTCAGGATCGAAGAGAGTAGCACAATATCTGATTAAGAGTCGTGCCCAAGTTACagaaaccaaaataaaagaatggTTCACAGAAATAAGAGTTTACCTAGAAAAAAGCGGATATCTATCTATATTCGATTATCCGGAGCGAATTTTCAATTGTGACGAAACCGCATTTTTCTTAAGTCCAAAAGAAAACTCGGTTTTAGTAActaaatga
- Protein Sequence
- MAANNLVRSKEKSNDVLKNALEAVNNGMTVHTASKTFEVPKTTLYNHFKKHLSCDVKQGAPTIFTKEQEGHLCSWIDHTAKTGFPISKETLLDCVQLLAKDLQIAHKFKDGRPDCHWYEGFLKRNPSGSKRVAQYLIKSRAQVTETKIKEWFTEIRVYLEKSGYLSIFDYPERIFNCDETAFFLSPKENSVLVTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -